Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1114
         (619 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    26   0.29 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   0.89 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   0.89 
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   3.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -1

Query: 220 AVSFTPNLNCKQRDCTKQKIKLQNTGRKYAGAKI-ARKSDS*RVVKKRANWTPIVFFF*I 44
           A +FT     K+R CT   + L +   K +GA +     DS  +V K  N   I +F+ +
Sbjct: 5   ARTFTIKCPVKKRKCTVSNVSLHSLKNKRSGASLQVGILDS--LVFKCYNLRRIYYFYCV 62

Query: 43  LQTILVH 23
             T  VH
Sbjct: 63  SITFNVH 69



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 149 VLKFYFLFCAITLFTI 196
           +L  Y+ +CA  +FT+
Sbjct: 143 LLCIYYFYCAFIIFTV 158


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = +3

Query: 168 CFVQSRCLQLRFGVKDTACPKTARQRTQLHHEGRK*QHPVPRHH 299
           C +Q+  +     +  T  P    Q    HH G   Q   P+HH
Sbjct: 136 CKLQAAAVTQNGVLGPTGSPPLTTQSMNNHHMGHHMQEQHPQHH 179


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = +3

Query: 168 CFVQSRCLQLRFGVKDTACPKTARQRTQLHHEGRK*QHPVPRHH 299
           C +Q+  +     +  T  P    Q    HH G   Q   P+HH
Sbjct: 138 CKLQAAAVTQNGVLGPTGSPPLTTQSMNNHHMGHHMQEQHPQHH 181


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 119 DFRTGVFSASVLKFYFLFCAITLFTIKVRSKRYS 220
           DF++ + S SV  F+F+   + +F +    K  S
Sbjct: 206 DFKSVIRSISVFSFFFMPSFVDIFRLTFVDKTAS 239


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 201 TLIVNNVIAQNKK*NFKTLAENTPVRKSRGNL 106
           TLI+ NV   + +  +  +A+N+    +RG+L
Sbjct: 564 TLIIENVERASDQATYDCVAKNSQGYSARGSL 595


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,271
Number of Sequences: 336
Number of extensions: 3494
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)