Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1114
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 28 0.94
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun... 27 2.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 3.8
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 26 5.0
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 26 5.0
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 25 6.6
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 25 6.6
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 25 8.8
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 25 8.8
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 8.8
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 25 8.8
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 28.3 bits (60), Expect = 0.94
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 493 QYVSMYLPLDGVNASVAFRARPS 425
QYVS +L +DG+ S+ F RPS
Sbjct: 357 QYVSCFLKVDGIMRSLYFLPRPS 379
>SPCC11E10.07c |||translation initiation factor eIF2B alpha
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 289 GTGCCYLRPSWCSCVRCLAVLGHAVSFTPN 200
G+GC R +C+ VL AVSFT N
Sbjct: 173 GSGCLMTRTLKNACIPTCMVLDSAVSFTMN 202
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 125 RTGVFSASVLKFYFLFCAITLFTIKVRSKRYSMSQNCKTTYTAAPRGTQITTPCTTAPP 301
++G F AS K+ + + ++V ++ S+SQN Y+ PR + P + PP
Sbjct: 590 QSGAFVASKAKYSSPY-DLPEEIVQVAQQKRSVSQNYNRQYSFQPRPATPSNPPRSLPP 647
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 133 RIFGQCFEVLFFVLCNHVVYN 195
++FG+ V FF+LC H+V N
Sbjct: 32 KVFGRSSIVTFFLLCFHLVPN 52
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 347 EVTLGGVYPLAPYPCVVVPWYRVLLFAS 264
++ +G VY Y C VVP Y + +++
Sbjct: 441 QLRMGAVYEFGKYGCPVVPRYSLFYYSA 468
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 137 FSASVLKFYFLFCAITLFTIKVRSKRYSMSQNCKTTYTAAP 259
F SV+ F+F F I T ++ R +M+ Y AAP
Sbjct: 1160 FYQSVICFFFSFLVINNVTTAAQNGRDTMAVQDLGVYVAAP 1200
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 319 RGYTPPSVTSNGNYKQVSSKALFGSVASINDLKRQE 426
RGY +GNY + ++ G+ S+ L RQE
Sbjct: 143 RGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQE 178
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 331 PPSVTSNGNYKQVSSKALFGSVASIND 411
PP V NGNY + +++ ++ +ND
Sbjct: 202 PPMVYINGNYSSIFNQSFRTEISIMND 228
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 161 YFLFCAITLFTIKVRSK 211
+F+FC I LF I V SK
Sbjct: 56 FFIFCLIPLFVIYVSSK 72
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 8 SLPRPMH*NCLQYLKKKNYRCP 73
S P+H C + + NYRCP
Sbjct: 289 SCSHPLHQRCHEEYIRTNYRCP 310
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 252 LHHEGRK*QHPVPRHHHT 305
LHHEG H HHH+
Sbjct: 294 LHHEGHHHHHHHHHHHHS 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,601
Number of Sequences: 5004
Number of extensions: 54549
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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