Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1114
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    31   0.73 
06_01_0077 + 626126-626137,626222-627421                               31   0.97 
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78...    30   1.7  
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73...    30   1.7  
12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613     27   9.0  

>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -2

Query: 540 HSLASIFFFKLYQHYHNMYPCICR*MALMRPSHFALALLLSLEVIDRSDAAE*RFRRHLL 361
           HSL+ I    L +  +  + C      L +P HF L L+LS +++    +   + RR+ L
Sbjct: 569 HSLSKIMILHLKRFSYGSHGCT----KLFKPIHFPLELVLSRDLLSSPSSEHMQSRRYEL 624

Query: 360 IISI 349
           + +I
Sbjct: 625 VATI 628


>06_01_0077 + 626126-626137,626222-627421
          Length = 403

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 304 VWWCRGTGCCYLRPSWCSCVRCLAVLGHAVSFT 206
           +WW     C Y+RP +  C   L ++ H +SF+
Sbjct: 256 LWWDNMNECPYMRPWFVVCGDMLLIVDHYISFS 288


>12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-780281,
            780377-780571,780681-780788,780935-781156,781669-781986,
            781988-782615,783059-783135,783161-783267,783491-783619,
            783763-783820,783902-783984,784458-784539,784617-784693,
            784827-784910,784999-785068,785146-785234,785319-786008,
            786485-786797
          Length = 1410

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +1

Query: 244  VHSCTTRDANNNTLYHGTTTQGYGARGYTPPSVTSNG 354
            V   TTRD NNN   HG+     GA     P  T +G
Sbjct: 1124 VEEITTRDENNNICTHGSRQLPSGALSMIGPPTTLSG 1160


>11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-739843,
            739953-740060,740184-740405,740806-741390,741495-741863,
            742423-742529,742755-742883,743027-743084,743166-743248,
            744115-744196,744274-744350,744477-744560,744649-744718,
            744796-744884,744965-745654,746127-746439
          Length = 1338

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +1

Query: 244  VHSCTTRDANNNTLYHGTTTQGYGARGYTPPSVTSNG 354
            V   TTRD NNN   HG+     GA     P  T +G
Sbjct: 1101 VEEITTRDENNNICTHGSRQLPSGALSMIGPPTTLSG 1137


>12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613
          Length = 787

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = -1

Query: 289 GTGCCYLRPSWCSCVRCL-AVLGHAVSFTP 203
           G   CY+   W  C RCL A    A +F P
Sbjct: 89  GVAMCYVDRHWTKCRRCLDAATSGAAAFCP 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,577,823
Number of Sequences: 37544
Number of extensions: 394762
Number of successful extensions: 1167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)