Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1114
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_27029| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)                     28   5.3  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  

>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1276

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = -3

Query: 365  CL*FPLEVTLGGVYPLAPYPCVVVPWYRVLLFASLVVQLCTLSCSFGTCCIFYS 204
            CL  P  V L    P  P  C+ VP Y +L   SL +  C L C    C +  S
Sbjct: 1121 CLAVPCYVVLSLAMPCCPLLCLAVPCYALL---SLAMSCCPLLCRAVPCYVVLS 1171



 Score = 32.3 bits (70), Expect = 0.32
 Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
 Frame = -3

Query: 443  ISRSPFSCRLRSLIEAT-LPNSAFDDTCL*FPLEVTLGGVYPLAPYPCVVVPWYRVLLFA 267
            +S  P  CR     +   L  + +D  CL  P    L    P  P  C+ VP Y VL   
Sbjct: 1074 MSCCPLLCRAIPCYDLLCLAMTCYDLLCLAVPCYALLSLAMPCCPLLCLAVPCYVVL--- 1130

Query: 266  SLVVQLCTLSCSFGTC 219
            SL +  C L C    C
Sbjct: 1131 SLAMPCCPLLCLAVPC 1146


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -1

Query: 295 CRGTGCCYLRPSWCSCVRCLAVLGHAVSFTPNLNCKQRD-CTKQKIKLQNTGRKYAGAKI 119
           CR T   Y    +   + C+ VLG  +      NC+  + C K KI+   T R   GA  
Sbjct: 93  CRSTRMLYRVSQYYDVISCVVVLGCYIVCRSRANCEYLEACKKTKIEENVTLRGGIGAGT 152

Query: 118 ARK 110
            RK
Sbjct: 153 FRK 155


>SB_27029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 322 PSPRTPVWWCRGTGCCYLRPSWCSCVRCLAVLGHAV 215
           P  R+  + C     CY+  S+C+  R  +VL HAV
Sbjct: 321 PMSRSRRFLCHAVVLCYVTQSFCAMSRSSSVLCHAV 356


>SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 221 MSQNCKTTYTAAPRGTQITTPCTTAPP 301
           +S++C  TY   P G  I  P TT  P
Sbjct: 432 VSEHCAKTYPICPHGPDILIPTTTETP 458


>SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 488 CIHVSAARWR*CVRRISRSPFSCRLRSLIEATLPNSAF 375
           C+ VS  +W+      +  P  C+LR +I+   P + F
Sbjct: 731 CLPVSGEQWQRIKHAAADDPVMCKLRDVIKLGFPETKF 768


>SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)
          Length = 1656

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 174  VQSRCLQLRFGVKDTACPKTARQRTQLHHEGRK*QHPVPRHHH 302
            +Q+ C ++   +    C K  +Q+ + H   R+  H    HHH
Sbjct: 1348 IQNPCTKITHPLMAKICNKVQQQKQKKHRHHRRHYHHHHHHHH 1390


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -3

Query: 311  YPCVVVPWYRVLLFASLVVQLCTLSCSFGTCC 216
            Y C  VPWY      +LV    T  C  G  C
Sbjct: 929  YSCACVPWYTGRNCENLVTNCDTAPCQNGATC 960


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,596,689
Number of Sequences: 59808
Number of extensions: 447284
Number of successful extensions: 1601
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)