Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1114
         (619 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF050630-1|AAD09205.1|  884|Drosophila melanogaster Ahr homolog ...    27   2.1  
AE014297-2199|AAF55308.1|  884|Drosophila melanogaster CG6993-PA...    27   2.1  
AY118719-1|AAM50579.1|  512|Drosophila melanogaster AT29177p pro...    27   2.1  

>AF050630-1|AAD09205.1|  884|Drosophila melanogaster Ahr homolog
           spineless protein.
          Length = 884

 Score = 26.6 bits (56), Expect(2) = 2.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 207 VKDTACPKTARQRTQLHHEGRK*QHPVPRHHH 302
           V  ++C +  +Q+ Q HH      HP   HHH
Sbjct: 794 VHPSSCHQQQQQQQQQHHHAH--PHPHSHHHH 823



 Score = 22.2 bits (45), Expect(2) = 2.1
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 279 HPVPRHHHTGVRGEGVHAAKCH 344
           HP P  HH    G G   A+ H
Sbjct: 856 HPHPHPHHPSAGGGGHVPAQSH 877


>AE014297-2199|AAF55308.1|  884|Drosophila melanogaster CG6993-PA
           protein.
          Length = 884

 Score = 26.6 bits (56), Expect(2) = 2.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 207 VKDTACPKTARQRTQLHHEGRK*QHPVPRHHH 302
           V  ++C +  +Q+ Q HH      HP   HHH
Sbjct: 794 VHPSSCHQQQQQQQQQHHHAH--PHPHSHHHH 823



 Score = 22.2 bits (45), Expect(2) = 2.1
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 279 HPVPRHHHTGVRGEGVHAAKCH 344
           HP P  HH    G G   A+ H
Sbjct: 856 HPHPHPHHPSAGGGGHVPAQSH 877


>AY118719-1|AAM50579.1|  512|Drosophila melanogaster AT29177p
           protein.
          Length = 512

 Score = 26.6 bits (56), Expect(2) = 2.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 207 VKDTACPKTARQRTQLHHEGRK*QHPVPRHHH 302
           V  ++C +  +Q+ Q HH      HP   HHH
Sbjct: 422 VHPSSCHQQQQQQQQQHHHAH--PHPHSHHHH 451



 Score = 22.2 bits (45), Expect(2) = 2.1
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 279 HPVPRHHHTGVRGEGVHAAKCH 344
           HP P  HH    G G   A+ H
Sbjct: 484 HPHPHPHHPSAGGGGHVPAQSH 505


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,357,364
Number of Sequences: 53049
Number of extensions: 660011
Number of successful extensions: 2484
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2481
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)