Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1114
(619 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16685-3|AAA28169.3| 321|Caenorhabditis elegans Hypothetical pr... 31 0.87
AL110487-16|CAH10818.1| 304|Caenorhabditis elegans Hypothetical... 29 2.7
AL110487-15|CAH10817.1| 307|Caenorhabditis elegans Hypothetical... 29 2.7
AL110487-14|CAB54432.1| 395|Caenorhabditis elegans Hypothetical... 29 2.7
AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cycl... 29 3.5
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 28 4.6
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 28 4.6
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical... 28 6.1
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical... 28 6.1
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 27 8.1
>L16685-3|AAA28169.3| 321|Caenorhabditis elegans Hypothetical
protein ZC21.3 protein.
Length = 321
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 277 NTLYHGTTTQGYGARGYTPPSVTSNGNYKQVSS 375
+T Y T+T GY ++ Y P S +S+ Y+ S+
Sbjct: 86 STTYSPTSTYGYSSQNYNPSSASSSNVYRNPST 118
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 271 NNNTLYHGTTTQGYG-ARGYTPPSVTSNGNYKQVSSKALFGSVASINDLKRQEK 429
NN +Y+ TTQGYG +G + N N Q + F +SI ++Q++
Sbjct: 185 NNQGMYNTQTTQGYGNNQGSYQNQMMYNNNNPQNTQTTTFLYASSIQPQQQQQQ 238
>AL110487-16|CAH10818.1| 304|Caenorhabditis elegans Hypothetical
protein Y39E4B.3c protein.
Length = 304
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/70 (22%), Positives = 28/70 (40%)
Frame = +2
Query: 173 CAITLFTIKVRSKRYSMSQNCKTTYTAAPRGTQITTPCTTAPPHXXXXXXXXXXQVSPPM 352
C+I L + + + + +T TA+P G+ +P +T P S P
Sbjct: 188 CSIPLSQLTAQQSTTTTTPTTTSTTTASPDGSTTISPSSTTPTPEQVLQNIQYPDGSRPK 247
Query: 353 EIISKCRRKR 382
I+ C+ R
Sbjct: 248 NIVWACKAGR 257
>AL110487-15|CAH10817.1| 307|Caenorhabditis elegans Hypothetical
protein Y39E4B.3b protein.
Length = 307
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/70 (22%), Positives = 28/70 (40%)
Frame = +2
Query: 173 CAITLFTIKVRSKRYSMSQNCKTTYTAAPRGTQITTPCTTAPPHXXXXXXXXXXQVSPPM 352
C+I L + + + + +T TA+P G+ +P +T P S P
Sbjct: 188 CSIPLSQLTAQQSTTTTTPTTTSTTTASPDGSTTISPSSTTPTPEQVLQNIQYPDGSRPK 247
Query: 353 EIISKCRRKR 382
I+ C+ R
Sbjct: 248 NIVWACKAGR 257
>AL110487-14|CAB54432.1| 395|Caenorhabditis elegans Hypothetical
protein Y39E4B.3a protein.
Length = 395
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/70 (22%), Positives = 28/70 (40%)
Frame = +2
Query: 173 CAITLFTIKVRSKRYSMSQNCKTTYTAAPRGTQITTPCTTAPPHXXXXXXXXXXQVSPPM 352
C+I L + + + + +T TA+P G+ +P +T P S P
Sbjct: 188 CSIPLSQLTAQQSTTTTTPTTTSTTTASPDGSTTISPSSTTPTPEQVLQNIQYPDGSRPK 247
Query: 353 EIISKCRRKR 382
I+ C+ R
Sbjct: 248 NIVWACKAGR 257
>AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cyclase
protein 17 protein.
Length = 1146
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 87 LTTR*LSDFRAIFAPAYFRPVF*SF--IFCFVQS 182
LTTR DFRA PA P F F CFV++
Sbjct: 588 LTTRGRRDFRACLKPARLTPAFRLFSTFLCFVEA 621
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 VASINDLKRQEKGEREMRRTH*RHLAADTWIHIVIMLI 507
VA I +L+RQEK E+ +R H + D+W+ V +++
Sbjct: 406 VAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVL 443
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 VASINDLKRQEKGEREMRRTH*RHLAADTWIHIVIMLI 507
VA I +L+RQEK E+ +R H + D+W+ V +++
Sbjct: 406 VAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVL 443
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 394 VASINDLKRQEKGEREMRRTH*RHLAADTWIHIVIMLI 507
VA I +L+RQEK E+ +R H + D+W+ V +++
Sbjct: 406 VAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVL 443
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 28.3 bits (60), Expect = 4.6
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = -3
Query: 530 LPFFFLNYISIITICIHV 477
+P FF+N++SII +C+++
Sbjct: 243 VPAFFINFLSIIALCLNI 260
>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
protein C09E7.8b protein.
Length = 1080
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 301 TQGYGARGYTPPSVTSNGNYKQVSSKALFGSVASINDLKRQEKGEREM 444
TQ YG+ T PS +S GN + S A+ G + L + R++
Sbjct: 958 TQSYGSSISTMPSTSSRGNVQHHSGSAVRGQSITPTGLSQVPMSPRKL 1005
>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
protein C09E7.8a protein.
Length = 1114
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 301 TQGYGARGYTPPSVTSNGNYKQVSSKALFGSVASINDLKRQEKGEREM 444
TQ YG+ T PS +S GN + S A+ G + L + R++
Sbjct: 992 TQSYGSSISTMPSTSSRGNVQHHSGSAVRGQSITPTGLSQVPMSPRKL 1039
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 277 NTLYHGTTTQGYGARGYTPPSVTSNGNYKQVSSKALFGS 393
N + HGT QGYG+ G P G Y+Q ++ GS
Sbjct: 3024 NRMGHGTNPQGYGSTGQNVP-----GGYQQGQQQSGQGS 3057
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
R10E11.1b protein.
Length = 2056
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 253 SCVRCLAVLGHAVSFTPNLNCKQRDCTKQKIKLQNT 146
S RC+A L HA + NC++ C K K +Q+T
Sbjct: 1556 SIQRCIASLVHACQCR-DANCRRMSCHKMKRVVQHT 1590
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
R10E11.1a protein.
Length = 2045
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 253 SCVRCLAVLGHAVSFTPNLNCKQRDCTKQKIKLQNT 146
S RC+A L HA + NC++ C K K +Q+T
Sbjct: 1545 SIQRCIASLVHACQCR-DANCRRMSCHKMKRVVQHT 1579
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,010,767
Number of Sequences: 27780
Number of extensions: 333564
Number of successful extensions: 1020
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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