Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1114
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.78 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.2  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   9.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.6  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   9.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 263 GTQITTPCTTAPP 301
           G Q  TPCT +PP
Sbjct: 387 GAQFATPCTPSPP 399


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = -1

Query: 352 HWR*HLAACTPSPR-TP 305
           HW+    AC+P PR TP
Sbjct: 384 HWQMSCVACSPPPRQTP 400


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 307 PVWWCRGTGCCYLRPSWCSC 248
           P + C+G G  YL    C C
Sbjct: 230 PTFLCKGDGKWYLPSGGCHC 249


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 146 SVLKFYFLFCAITLFTIKVRSKRYSMSQNCK 238
           S+L+  F F ++ L T    +   S+  NCK
Sbjct: 3   SMLRCTFFFLSVILITSYFVTPTMSIKCNCK 33


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -2

Query: 522 FFFKLYQHYHNMYP 481
           ++  LY  YH  YP
Sbjct: 717 YYANLYTKYHGQYP 730


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 15/63 (23%), Positives = 23/63 (36%)
 Frame = +1

Query: 190 YN*GSE*KIQHVPKLQDNVHSCTTRDANNNTLYHGTTTQGYGARGYTPPSVTSNGNYKQV 369
           Y+ G +   +H PK   +V S    D  N  +       G    GY      +   YK++
Sbjct: 72  YHGGFKKTDKHPPKDFGDVDSLGNLDPANEFIVSTRVRCGRSLEGYPFNPCLTEAQYKEM 131

Query: 370 SSK 378
             K
Sbjct: 132 EEK 134


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 15/63 (23%), Positives = 23/63 (36%)
 Frame = +1

Query: 190 YN*GSE*KIQHVPKLQDNVHSCTTRDANNNTLYHGTTTQGYGARGYTPPSVTSNGNYKQV 369
           Y+ G +   +H PK   +V S    D  N  +       G    GY      +   YK++
Sbjct: 88  YHGGFKKTDKHPPKDFGDVDSLGNLDPANEFIVSTRVRCGRSLEGYPFNPCLTEAQYKEM 147

Query: 370 SSK 378
             K
Sbjct: 148 EEK 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,070
Number of Sequences: 438
Number of extensions: 4283
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)