Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1114
(619 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05540.1 68415.m00586 glycine-rich protein 30 1.4
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 29 2.5
At2g48060.1 68415.m06015 hypothetical protein 29 2.5
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 28 5.7
At5g36870.1 68418.m04417 glycosyl transferase family 48 protein ... 27 7.5
At4g23320.1 68417.m03360 protein kinase family protein contains ... 27 7.5
At2g04850.1 68415.m00500 auxin-responsive protein-related relate... 27 7.5
At4g23240.1 68417.m03351 protein kinase family protein contains ... 27 10.0
At3g59100.1 68416.m06589 glycosyl transferase family 48 protein ... 27 10.0
>At2g05540.1 68415.m00586 glycine-rich protein
Length = 135
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -1
Query: 298 WCRGTGCCYLRPSWCSCVRCLAVLGHAVSFTP 203
+CR GCCY R + C RC A G AV P
Sbjct: 99 YCR-YGCCY-RGYYGGCFRCCAYAGQAVQTQP 128
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 286 YHGTTTQGYGARGYTPPSVTSNGNY 360
Y+G QGY A GY PP N Y
Sbjct: 369 YYGYPPQGYEAYGYAPPPQDPNAYY 393
>At2g48060.1 68415.m06015 hypothetical protein
Length = 621
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -2
Query: 525 IFFFKLYQHYHNMYPCICR*MALMRPSHFALALLLSLEVIDRSDAAE*RFRRHLL 361
+ FF +Y HN+ I + + L+ HFAL +L ++++ S E R +L
Sbjct: 513 VIFFLMYLLSHNINRKIRKSLILLCEVHFALLYILEIDLVSNSLKQEGSASREVL 567
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +2
Query: 113 PRDFRTGVFSASVLKFYFLFCAITLFTIKVRSKRYSMSQNCKTTYTAAPRGTQITTPCTT 292
P+D + G +A+ L + + AI + + R Q C T A+P + T T
Sbjct: 1354 PKDAKAGAENAAQLSVFLVENAIVILMLVEDHLRSQSKQTCATNAVASPSPLKKRTSTLT 1413
Query: 293 A 295
A
Sbjct: 1414 A 1414
>At5g36870.1 68418.m04417 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1862
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 411 PQATGEGRARNATDALTPSSGRYMDTYCDNADII*KKKWKLRN 539
P GEG+ N +A+ + G + T N D ++ +K+RN
Sbjct: 1231 PPIIGEGKPENQNNAIIFTRGEALQTIDMNQDYYIEEAFKMRN 1273
>At4g23320.1 68417.m03360 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 416
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 295 TTTQGYGARGYTPPSVTSNGNYKQVSSKALFG 390
TT + G GY PP +NG + S FG
Sbjct: 310 TTARVVGTIGYMPPEYVTNGQFSTKSDVYSFG 341
>At2g04850.1 68415.m00500 auxin-responsive protein-related related
to auxin-induced protein AIR12 GI:11357190 [Arabidopsis
thaliana]
Length = 404
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 268 ANNNTLYHGTTTQGYGARGYTPP-SVTSNGNYKQVSSKALFGSVASINDLKRQEKGEREM 444
++NNT H +G +GY+P T++ + S+ + A++N Q G R +
Sbjct: 160 SSNNTKIHHVWNRGLYVQGYSPTIHPTTSTDLSSFSTFDVTSGFATVN----QNSGSRAL 215
Query: 445 RRTH 456
+ TH
Sbjct: 216 KVTH 219
>At4g23240.1 68417.m03351 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 352
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 295 TTTQGYGARGYTPPSVTSNGNYKQVSSKALFG 390
TT + G GY PP +NG + S FG
Sbjct: 183 TTGRVVGTFGYMPPEYVANGQFSMKSDVYSFG 214
>At3g59100.1 68416.m06589 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1934
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 411 PQATGEGRARNATDALTPSSGRYMDTYCDNADII*KKKWKLRNDL 545
P GEG+ N A+ + G + T N D ++ +KLRN L
Sbjct: 1296 PAEIGEGKPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKLRNVL 1340
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,804,404
Number of Sequences: 28952
Number of extensions: 296051
Number of successful extensions: 778
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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