Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1113
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 174 8e-45
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 103 2e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 101 1e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 94 2e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 70 3e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 66 4e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 54 2e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 43 3e-05
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 35 0.009
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.084
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.34
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 30 0.34
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 0.59
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 28 1.4
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 27 1.8
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 1.8
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 1.8
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 27 2.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 23 3.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.2
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.2
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 26 4.2
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.5
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 7.3
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 7.3
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 174 bits (424), Expect = 8e-45
Identities = 78/87 (89%), Positives = 82/87 (94%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 427
++ ILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 428 QIMFETFNTPAMYVAIQAVLSLYASGR 508
QI+FETFN PA YVAIQAVLSLYASGR
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYASGR 147
Score = 126 bits (305), Expect = 2e-30
Identities = 56/61 (91%), Positives = 60/61 (98%)
Frame = +3
Query: 72 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 251
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 252 R 254
R
Sbjct: 62 R 62
Score = 92.3 bits (219), Expect = 6e-20
Identities = 41/44 (93%), Positives = 44/44 (100%)
Frame = +1
Query: 508 STGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 639
+TGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMK
Sbjct: 148 TTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMK 191
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 103 bits (248), Expect = 2e-23
Identities = 43/85 (50%), Positives = 65/85 (76%)
Frame = +2
Query: 251 KSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 430
+S+L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 431 IMFETFNTPAMYVAIQAVLSLYASG 505
MFE + +YVAIQAVLSLYA G
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQG 146
Score = 61.7 bits (143), Expect = 9e-11
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +1
Query: 508 STGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 636
S+G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+
Sbjct: 148 SSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLI 190
Score = 55.6 bits (128), Expect = 6e-09
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +3
Query: 78 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 251
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 252 R 254
R
Sbjct: 62 R 62
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 101 bits (241), Expect = 1e-22
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +2
Query: 263 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 442
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 443 TFNTPAMYVAIQAVLSLYAS 502
+FN +Y+A+QAVL+L AS
Sbjct: 149 SFNCAGLYIAVQAVLALAAS 168
Score = 54.4 bits (125), Expect = 1e-08
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +1
Query: 502 RSSTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 633
RS TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++
Sbjct: 177 RSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFV 220
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 239
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 93.9 bits (223), Expect = 2e-20
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Frame = +2
Query: 251 KSILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMT 427
+ +L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 428 QIMFETFNTPAMYVAIQAVLSLYASGR 508
+ +ET N PA+ ++Q VL+LYAS R
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASAR 152
Score = 70.9 bits (166), Expect = 1e-13
Identities = 31/55 (56%), Positives = 40/55 (72%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ R
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLR 66
Score = 62.9 bits (146), Expect = 4e-11
Identities = 28/53 (52%), Positives = 41/53 (77%)
Frame = +1
Query: 475 PSRALAVRVRSSTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 633
P AL R+ TGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL
Sbjct: 143 PVLALYASART-TGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYL 194
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 70.1 bits (164), Expect = 3e-13
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = +2
Query: 260 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 439
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 440 ETFNTPAMYVAIQAVLSLYASGR 508
E+ PA Y+A Q + +ASG+
Sbjct: 123 ESLRCPATYLAKQETCAAFASGK 145
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 176
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 66.1 bits (154), Expect = 4e-12
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = +2
Query: 275 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 454
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 455 PAMYVAIQAVLSLYASGRPPVS 520
P++ I + S Y + +P S
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSS 166
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 505 SSTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 639
SS+GIVL+ G+ SH +P+ G + R+ G + YL+K
Sbjct: 164 SSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLK 208
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 185
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 54.0 bits (124), Expect = 2e-08
Identities = 22/75 (29%), Positives = 43/75 (57%)
Frame = +2
Query: 284 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 463
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 464 YVAIQAVLSLYASGR 508
Y+ QAV +A+ +
Sbjct: 134 YLTKQAVCVAFANSK 148
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 245
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 43.2 bits (97), Expect = 3e-05
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +2
Query: 275 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 442
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 443 TFNTPAMYVAIQAVLSLYASG 505
P +A + ++ LYA G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIG 192
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 35.1 bits (77), Expect = 0.009
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 517 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 633
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYL 197
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.084
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 335 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 478
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.34
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 232 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 71
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 29.9 bits (64), Expect = 0.34
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 479 AVLSLYASGRPPV---SCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATSQT 628
++LSLYAS RP V S T AT P P + T S P + P T +
Sbjct: 218 SILSLYASPRPQVSSSSITTNATYQNLPSPVSTSTTSSQPYGAFHQPATTGSS 270
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 29.1 bits (62), Expect = 0.59
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 273 YLRVRILFCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 154
Y + L + L+ K+PS PY SRP A S TR
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.9 bits (59), Expect = 1.4
Identities = 23/58 (39%), Positives = 28/58 (48%)
Frame = -1
Query: 266 GSGYSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 93
G G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 582 PRHPASGLSRSRPHRLPHERSLNP 653
P++P + L++ PH LPH R+ P
Sbjct: 150 PKNPHAFLAQDLPHGLPHRRAALP 173
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 135 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
G+ PRA F ++ P H G+++ M KD G+E S +
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPK 539
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 1.8
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = +3
Query: 444 HST-RPPCTSPSKPCSRCTRPVVH-RYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSR 617
HST R TSP+ R + +R G RR P+R HL R RH + R
Sbjct: 121 HSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHH---RHSTTNYHSKR 177
Query: 618 PHRLPHERSLNPS 656
R R +P+
Sbjct: 178 DDRYERRREHSPN 190
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -3
Query: 576 CVSF-VDGHGVGDTVAGVQHDTGGRPDAYSESTAWMATYMAGVLNVSNMIWVIFSLLALG 400
C+S + G G+G G D GGR Y S + N++ +I S +G
Sbjct: 122 CLSMNILGSGLGPMFLGPLSDIGGRKPVYFCSIFVYTVFNISCALPRNIVQMIISHFIIG 181
Query: 399 LRGASVSRTGCSSG 358
+ G S + T + G
Sbjct: 182 VAG-STALTNVAGG 194
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 23.4 bits (48), Expect(2) = 3.1
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 527 TPATVSPTPCPSTKDT 574
TPA V P P PST T
Sbjct: 844 TPADVHPLPPPSTSTT 859
Score = 21.4 bits (43), Expect(2) = 3.1
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +2
Query: 557 PSTKDTHSPTPSCVWT*PVATSQTTS*K-IP*PEP 658
PS SP P P A S+T+S +P P P
Sbjct: 878 PSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPP 912
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 509 PPVSCWTPATVSPTPCPSTKDTHSP 583
PPV+C TP P C K H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 235 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 119
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 377 LLTEAPLNPKANREKMTQIMFETFN 451
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +2
Query: 413 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRPPVSCWTPATVSPTPCPSTKDTHSPTP 589
RE++ Q+ + P+ Y+ LS Y R P S P+ PST HSP P
Sbjct: 134 RERLNQVELQLSERPSSYLGYHNNLSPY---RSPNSY-------PSLLPSTHSPHSPAP 182
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 117 TYRSHCLLPTRQLLRRTS*ISEI 49
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 7.3
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +2
Query: 374 VLLTEAPLNPK-ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRPPVSCWTPATVS-P 547
V+LT + +P ++ E +T + + + ++ S AS PVS + ATVS
Sbjct: 200 VILTTSVNSPAVSSSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVST-SEATVSFS 258
Query: 548 TPCPSTKDTHSPTPSCVWT*PVATSQT 628
T P+T T S S + V TS T
Sbjct: 259 TDIPATPSTLSSPASSSSSYLVETSST 285
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 509 PPVSCWTPATVSP-TPCPSTKDTHSPTPSCVWT*PVATS 622
P V + A SP TP P K+T +P+ S P ATS
Sbjct: 507 PSVRSASRAMTSPRTPLPRVKNTQNPSRSISAEPPSATS 545
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 552 GVGDTVAGVQHDTGGRPDA-YSESTAWMATYMAGVLNVSNMIWVIF 418
GV DT+ + + G+P Y EST + A + N++ + W ++
Sbjct: 402 GVQDTLTAIWNTNSGKPSGWYLESTMYKALDVT-YYNLNTLSWNLY 446
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,981
Number of Sequences: 5004
Number of extensions: 68907
Number of successful extensions: 228
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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