Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1113
(659 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 8e-47
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 8e-47
SB_56| Best HMM Match : Actin (HMM E-Value=0) 184 8e-47
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 184 8e-47
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 8e-47
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 3e-30
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 9e-22
SB_54| Best HMM Match : Actin (HMM E-Value=0) 99 4e-21
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 90 1e-18
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 81 1e-15
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 71 6e-13
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 54 1e-07
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 52 4e-07
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 3e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.63
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7) 31 1.1
SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 30 1.5
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 1.5
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 30 1.9
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 30 1.9
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 30 1.9
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 30 1.9
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 29 2.5
SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30) 29 3.4
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 29 3.4
SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2) 29 3.4
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12) 29 4.4
SB_18355| Best HMM Match : Extensin_2 (HMM E-Value=0.55) 29 4.4
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 29 4.4
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1) 29 4.4
SB_34718| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 29 4.4
SB_35006| Best HMM Match : PT (HMM E-Value=3.4) 28 5.9
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_25802| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_19784| Best HMM Match : PHD (HMM E-Value=0.0006) 28 5.9
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_17570| Best HMM Match : PHD (HMM E-Value=0.0006) 28 5.9
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0) 28 5.9
SB_2748| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-08) 28 5.9
SB_54423| Best HMM Match : RVT_1 (HMM E-Value=7.7e-32) 28 5.9
SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 28 7.7
SB_17678| Best HMM Match : zf-C2H2 (HMM E-Value=8.3e-16) 28 7.7
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1) 28 7.7
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 184 bits (447), Expect = 8e-47
Identities = 83/87 (95%), Positives = 86/87 (98%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 427
++ ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 428 QIMFETFNTPAMYVAIQAVLSLYASGR 508
QIMFETFN+PAMYVAIQAVLSLYASGR
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASGR 148
Score = 130 bits (314), Expect = 1e-30
Identities = 60/63 (95%), Positives = 62/63 (98%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 245
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 246 SKR 254
SKR
Sbjct: 61 SKR 63
Score = 91.5 bits (217), Expect = 6e-19
Identities = 40/44 (90%), Positives = 44/44 (100%)
Frame = +1
Query: 508 STGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 639
+TGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMK
Sbjct: 149 TTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMK 192
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 184 bits (447), Expect = 8e-47
Identities = 83/87 (95%), Positives = 86/87 (98%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 427
++ ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 428 QIMFETFNTPAMYVAIQAVLSLYASGR 508
QIMFETFN+PAMYVAIQAVLSLYASGR
Sbjct: 121 QIMFETFNSPAMYVAIQAVLSLYASGR 147
Score = 127 bits (307), Expect = 7e-30
Identities = 58/61 (95%), Positives = 61/61 (100%)
Frame = +3
Query: 72 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 251
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 252 R 254
R
Sbjct: 62 R 62
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/44 (93%), Positives = 44/44 (100%)
Frame = +1
Query: 508 STGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 639
+TGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMK
Sbjct: 148 TTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 191
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 184 bits (447), Expect = 8e-47
Identities = 83/87 (95%), Positives = 86/87 (98%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 427
++ ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 428 QIMFETFNTPAMYVAIQAVLSLYASGR 508
QIMFETFN+PAMYVAIQAVLSLYASGR
Sbjct: 121 QIMFETFNSPAMYVAIQAVLSLYASGR 147
Score = 128 bits (310), Expect = 3e-30
Identities = 59/61 (96%), Positives = 61/61 (100%)
Frame = +3
Query: 72 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 251
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 252 R 254
R
Sbjct: 62 R 62
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/44 (93%), Positives = 44/44 (100%)
Frame = +1
Query: 508 STGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 639
+TGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMK
Sbjct: 148 TTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 191
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 184 bits (447), Expect = 8e-47
Identities = 83/87 (95%), Positives = 86/87 (98%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 427
++ ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 428 QIMFETFNTPAMYVAIQAVLSLYASGR 508
QIMFETFN+PAMYVAIQAVLSLYASGR
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASGR 148
Score = 134 bits (325), Expect = 5e-32
Identities = 61/63 (96%), Positives = 63/63 (100%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 245
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 246 SKR 254
SKR
Sbjct: 61 SKR 63
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/44 (93%), Positives = 44/44 (100%)
Frame = +1
Query: 508 STGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 639
+TGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMK
Sbjct: 149 TTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 192
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 184 bits (447), Expect = 8e-47
Identities = 83/87 (95%), Positives = 86/87 (98%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 427
++ ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 428 QIMFETFNTPAMYVAIQAVLSLYASGR 508
QIMFETFN+PAMYVAIQAVLSLYASGR
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASGR 148
Score = 130 bits (314), Expect = 1e-30
Identities = 58/63 (92%), Positives = 62/63 (98%)
Frame = +3
Query: 66 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 245
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 246 SKR 254
SKR
Sbjct: 61 SKR 63
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/25 (80%), Positives = 23/25 (92%), Gaps = 2/25 (8%)
Frame = +1
Query: 508 STGIVLDSGDGVSHTVPIYE--GYA 576
+TGIV+DSGDGVSHTVPIYE GY+
Sbjct: 149 TTGIVMDSGDGVSHTVPIYEERGYS 173
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 128 bits (310), Expect = 3e-30
Identities = 58/61 (95%), Positives = 61/61 (100%)
Frame = +3
Query: 72 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 251
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 252 R 254
R
Sbjct: 62 R 62
Score = 91.5 bits (217), Expect = 6e-19
Identities = 40/44 (90%), Positives = 44/44 (100%)
Frame = +1
Query: 508 STGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 639
+TGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMK
Sbjct: 111 TTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMK 154
Score = 57.6 bits (133), Expect = 8e-09
Identities = 27/33 (81%), Positives = 30/33 (90%)
Frame = +2
Query: 410 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGR 508
N + M +IMFETFN+PAMYVAIQAVLSLYASGR
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGR 110
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +2
Query: 248 QKSILTLKYPIEHGIVTNWDDMEKIWHHTF 337
++ ILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 100 bits (240), Expect = 9e-22
Identities = 43/89 (48%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
Frame = +2
Query: 242 TEQKSILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANRE 418
++ + +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NRE
Sbjct: 62 SQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNRE 121
Query: 419 KMTQIMFETFNTPAMYVAIQAVLSLYASG 505
KM ++MFE + +Y+AIQAVL+LYA G
Sbjct: 122 KMIEVMFENYQFEGVYIAIQAVLTLYAQG 150
Score = 73.3 bits (172), Expect = 2e-13
Identities = 31/48 (64%), Positives = 39/48 (81%)
Frame = +1
Query: 511 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKDPLTR 654
TG+V+DSGDGV+H P+YEG+ALPH RLD+AGRD+T YL+K L R
Sbjct: 153 TGVVIDSGDGVTHICPVYEGFALPHLTRRLDIAGRDITKYLIKLMLLR 200
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 84 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKR 254
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLR 65
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 98.7 bits (235), Expect = 4e-21
Identities = 44/64 (68%), Positives = 54/64 (84%)
Frame = +2
Query: 317 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 496
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 497 ASGR 508
ASGR
Sbjct: 2189 ASGR 2192
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = +1
Query: 508 STGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 639
+TG V D GDGVSHTVP+Y+GY LPHA R+DLAGRDLT YL +
Sbjct: 2193 TTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQR 2236
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 191
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 90.2 bits (214), Expect = 1e-18
Identities = 40/44 (90%), Positives = 42/44 (95%)
Frame = +1
Query: 508 STGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 639
+TG+V DSGDGVSH VPIYEGYALPHAILRLDLAGRDLTDYLMK
Sbjct: 27 TTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLAGRDLTDYLMK 70
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +2
Query: 431 IMFETFNTPAMYVAIQAVLSLYASGR 508
IMFE FN+PA+YVAIQAVLSLYASGR
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGR 26
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 80.6 bits (190), Expect = 1e-15
Identities = 33/48 (68%), Positives = 43/48 (89%)
Frame = +2
Query: 365 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR 508
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GR
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGR 173
Score = 73.7 bits (173), Expect = 1e-13
Identities = 29/42 (69%), Positives = 40/42 (95%)
Frame = +1
Query: 508 STGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 633
+TG+VLD+GDGVSH+VPIYEG+A+PH+I+R D+AGRD++ YL
Sbjct: 174 TTGVVLDAGDGVSHSVPIYEGFAMPHSIMRTDIAGRDVSRYL 215
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 71.3 bits (167), Expect = 6e-13
Identities = 29/78 (37%), Positives = 51/78 (65%)
Frame = +2
Query: 275 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 454
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 455 PAMYVAIQAVLSLYASGR 508
PA ++ +VL+ +A+GR
Sbjct: 63 PAFFLCKNSVLTAFANGR 80
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 508 STGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 624
S G+V+DSG + VP+++GY L AI+R LAG +T
Sbjct: 81 SNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFIT 119
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 191
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 54.0 bits (124), Expect = 1e-07
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +1
Query: 502 RSSTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 639
R+ TG V+DSGDGV+H +P+ EGY + I + +AGRD+T ++ +
Sbjct: 59 RTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITFFVQQ 104
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +3
Query: 60 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 230
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 231 GDEAQSK 251
GD A +K
Sbjct: 753 GDAAVAK 759
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +2
Query: 269 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 382
K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +1
Query: 502 RSSTGIVLDSGDGVSHTVPI 561
R+ TG V+DSGDGV+H +P+
Sbjct: 353 RTLTGCVIDSGDGVTHVIPV 372
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -1
Query: 188 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 72
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.9 bits (69), Expect = 0.48
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +2
Query: 191 GRDGRYGTEGLLCRR*-GTEQKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 361
GR G + GL G+ + L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 362 EEHPVLLTEAPLNPKANRE 418
HPV++TE NP R+
Sbjct: 165 VNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 163 GNTARGASSPAKPALHIPEPLSTT 92
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 163 GNTARGASSPAKPALHIPEPLSTT 92
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1065
Score = 31.1 bits (67), Expect = 0.83
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +2
Query: 350 RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRPPVSCWT 529
++A + +P + E N K + +K+ Q M +T + + ++ +A P W
Sbjct: 866 KIASKHNPEMTEEMRANLKEHLDKINQRMNDTMT---LLYNMPKIMRKFAFELPN---WA 919
Query: 530 PATVSPTPCPSTKDTHSP-TPSCV 598
P PT P+ K T +P TPS V
Sbjct: 920 PKIPLPTEPPTEKMTEAPTTPSAV 943
>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
Length = 186
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Frame = -3
Query: 369 CSSGATRSSL*KV*CQIFSMSSQLVTIPCSMG--YLRVRILFCSVPHLLHKSPSVPYRPS 196
CS + + C + ++V CS Y+ V + CS + H+ PS
Sbjct: 88 CSPSRAHVDVFPITCSCRCVPHRMVMSMCSPSRVYVDVSPIVCSCRCVPHRVLMSMCSPS 147
Query: 195 RPDGGAFPRSRGTRREEHHLLRNRPCTYRSH 103
R D FP + R HH+L + + R+H
Sbjct: 148 RADVDVFPITCSRRCVFHHVLMSMCSSSRAH 178
>SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/68 (38%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Frame = +3
Query: 444 HSTRPPCTSPSKPCSR--CTRPVVHRYRAGL-RRRCLPH----RAHLRRIRTPPRHPASG 602
H R C P SR RP +H R L RRR H R H RR R R P
Sbjct: 141 HGAREACAIGPYPLSRRHTRRPRLHTRRPRLHRRRTRLHTRRPRLHTRRPRLHRRRPRLH 200
Query: 603 LSRSRPHR 626
R R HR
Sbjct: 201 TRRPRRHR 208
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 163 GNTARGASSPAKPALHIPEPLSTT 92
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 391 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 483
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 245 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 111
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 216 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 254 SILTLKYPIEHGIVTNWDDMEKIWHHTFYNE 346
S L P + G + NWD ++IW +TF E
Sbjct: 285 SALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 78 EVAALVVDNGSGMCKAGFAGDDAPRAV 158
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 245 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 111
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 411 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = -1
Query: 251 FALCLISYI--RVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQR 87
FA CL + V+LSH + H L A +HG R+ SCET L H A + +
Sbjct: 462 FATCLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKH 520
Query: 86 GNFFVAHLELVK 51
G V L+ K
Sbjct: 521 GQVDVLLLDFQK 532
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 245 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 111
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 274 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 245 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 111
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 252 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 245 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 111
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 94 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 245 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 111
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 94 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 245 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 111
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 128 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 245 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 111
+C ++LSH + H M D +HG RS SCET L T
Sbjct: 176 ICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)
Length = 300
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 492 CTRPVVHRYRAGLRRRCLPHRAHLRRIRT-PPR 587
C PVV+ R+C+ H +R+RT PPR
Sbjct: 260 CCNPVVYSLHNPKLRKCMNRLVHHKRVRTSPPR 292
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 546 PHRAHL--RRIRTPPRHPASGLSRSRPHRLPHERSLNPS 656
PH L R+ P HP L+ RP + PH+ ++PS
Sbjct: 2182 PHANTLSPRQQTMSPAHPQQSLTSPRPAQSPHQSHMDPS 2220
>SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2)
Length = 563
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 435 CSKHSTRPPCTSPSKPCSRCTRPVVHRYRAG 527
C H+ R P T+PS PC Y AG
Sbjct: 360 CYSHARREPSTAPSLPCDLVAATSAKMYLAG 390
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 509 PPVSCWTPATVSPTPCPSTKDTHSPT-PSCVWT*PVATSQTT 631
P ++ TP T +PTP T TH+PT PS A +QTT
Sbjct: 13 PTLTKATPQT-TPTPTKPTPTTHTPTKPSPTTPTSTAPTQTT 53
>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
Length = 439
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/73 (30%), Positives = 28/73 (38%)
Frame = +2
Query: 371 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRPPVSCWTPATVSPT 550
PVL A P A + TQ + P ++ V + A PPV P TV P
Sbjct: 22 PVLTEAATTQPPAPPPEPTQAPVADTDPPTNPPSVVEVTTTQAPPPPPVVTEAPTTV-PP 80
Query: 551 PCPSTKDTHSPTP 589
P + T P P
Sbjct: 81 PVVTDAPTTVPPP 93
>SB_18355| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
Length = 247
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 465 TSPSKPCSRCTRPVVHRYRAGLRRRCLPHRAHLRRIRTPPRHPA 596
+SPS P ++ +P VH+Y + CLP + L PP +PA
Sbjct: 153 SSPSPP-TKPPKPSVHKYASDPELACLPQQTSL-----PPANPA 190
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 158 VPLDRGKAPPSGRDGRYGTEGLLCRR*GTEQKSILTLKYPIEHGIVTNW--DDMEKIWHH 331
V L + +GR+ G+ +CR+ + ++TL + I G+ + D EK+W+H
Sbjct: 441 VTLSQNVVSVTGREESGGSGTQVCRK----KAPLITLSHVIRMGLALSLVSDVKEKVWYH 496
Query: 332 TFYN 343
T N
Sbjct: 497 TCPN 500
>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1221
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Frame = +3
Query: 468 SPSKPCSRCTRPVVHRYRAGLRRRCLPHRA----HLRRIRTPPRHPASGLSRSRPHRLPH 635
+PSKP P H ++ R+ P H + ++PP HP S S+P P
Sbjct: 388 TPSKPPMPAKSPGRHSGQSSPRQASPPQSVKSPIHFQANKSPPFHPQRSPSASKPSSRPP 447
Query: 636 ERS--LNPSR 659
S NPS+
Sbjct: 448 PLSSVQNPSK 457
>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
Length = 231
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 512 PVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATSQTTS 634
P + +TP T S TP PS T S TP+ +T + + TTS
Sbjct: 64 PTTSYTPTT-SYTPTPSYTPTTSYTPTPSYTSTTSYTPTTS 103
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 512 PVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATSQTTS 634
P +TP T S TP PS T S TP+ +T + + TTS
Sbjct: 112 PTPSYTP-TPSYTPTPSYTSTTSYTPTTSYTPTPSYTSTTS 151
>SB_34718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 515 VSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATSQTTS 634
+S +P T + P + +T P+PS T P AT+ T S
Sbjct: 8 LSAGSPVTAPSSTRPPSPNTRPPSPSTTATLPSATNSTQS 47
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 465 TSPSKPCSRCTRPVVHRYRAGLRRRCLPHRAHLRRIRTPPRHPA 596
+SPS P ++ +P VH+Y + CLP + L PP +PA
Sbjct: 258 SSPSPP-TKPPKPSVHKYASDPELACLPQQTSL-----PPANPA 295
>SB_35006| Best HMM Match : PT (HMM E-Value=3.4)
Length = 325
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -2
Query: 283 FDGVFEGQDTLLLCASSPT*ESFCPIPTITP*WRGLPT 170
+DGV + + LLL +SSP S PI TP +GL T
Sbjct: 273 YDGVIDIKLNLLLLSSSPMFLSAVPIAPHTPTLQGLHT 310
>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1800
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 459 PCTSPSKPCSRCTRPVVHRYRAGLRRRCLPHRAHLRRIRTPP 584
P PS+ CS C R + +RA L C ++H++ + P
Sbjct: 1003 PNPGPSEKCSVCLRTIARNHRAVL-CDCCKGQSHIKCVNVKP 1043
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +2
Query: 509 PPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATSQTT 631
PPV+ TP T T P+TK T + P+ P AT TT
Sbjct: 6111 PPVT--TPTTAPTTTPPTTKQTTTQLPATTKA-PTATKPTT 6148
>SB_25802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +2
Query: 428 QIMFETFNTPAMYVAIQAVLSLYASGRPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT* 607
+++++ + A + V S + PP T T PS T TPS V T
Sbjct: 8 ELIYDIDPSSAQAAEMATVSSPTTTATPPYDTTTTPLYDTTATPSYVTT--ATPSYVTTA 65
Query: 608 PVATSQTTS 634
PV +S+TT+
Sbjct: 66 PVYSSETTT 74
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 163 GNTARGASSPAKPALHIPEPLSTT 92
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_19784| Best HMM Match : PHD (HMM E-Value=0.0006)
Length = 198
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 459 PCTSPSKPCSRCTRPVVHRYRAGLRRRCLPHRAHLRRIRTPP 584
P PS+ CS C R + +RA L C ++H++ + P
Sbjct: 31 PNPGPSEKCSVCLRTIARNHRAVL-CDCCKGQSHIKCVNVKP 71
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 527 TPATVSPTPCPSTKDTHSPTPSCVWT*PVATSQT 628
T T +PT +T +T + TP+ T P AT+ T
Sbjct: 175 TATTTTPTATTTTPNTTTNTPNATTTTPTATTTT 208
>SB_17570| Best HMM Match : PHD (HMM E-Value=0.0006)
Length = 243
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 459 PCTSPSKPCSRCTRPVVHRYRAGLRRRCLPHRAHLRRIRTPP 584
P PS+ CS C R + +RA L C ++H++ + P
Sbjct: 98 PNPGPSEKCSVCLRTIARNHRAVL-CDCCKGQSHIKCVNVKP 138
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 163 GNTARGASSPAKPALHIPEPLSTT 92
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1623
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 459 PCTSPSKPCSRCTRPVVHRYRAGLRRRCLPHRAHLRRIRTPP 584
P PS+ CS C R + +RA L C ++H++ + P
Sbjct: 98 PNPGPSEKCSVCLRTIARNHRAVL-CDCCKGQSHIKCVNVKP 138
>SB_2748| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-08)
Length = 438
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 459 PCTSPSKPCSRCTRPVVHRYRAGLRRRCLPHRAHLRRIRTPP 584
P PS+ CS C R + +RA L C ++H++ + P
Sbjct: 98 PNPGPSEKCSVCLRTIARNHRAVL-CDCCKGQSHIKCVNVKP 138
>SB_54423| Best HMM Match : RVT_1 (HMM E-Value=7.7e-32)
Length = 775
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 459 PCTSPSKPCSRCTRPVVHRYRAGLRRRCLPHRAHLRRIRTPP 584
P PS+ CS C R + +RA L C ++H++ + P
Sbjct: 98 PNPGPSEKCSVCLRTIARNHRAVL-CDCCKGQSHIKCVNVKP 138
>SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 459 PCTSPSKPCSRCTRPVVHRYRAGLRRRCLPHRAHLRRIRTPP 584
P PS+ CS C R + +RA L C ++H++ + P
Sbjct: 746 PNPGPSEKCSVCLRTIARNHRAVL-CDCCKGQSHIKCVNVKP 786
>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 440 ETFNTPAMYVAIQAVLSLYASGRPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVAT 619
ET + PA+ I + + + PP++ T + S TP +T + + + + T P T
Sbjct: 661 ETTHHPAVQT-IPIIKTSATTQTPPIASTTDTSTSQTPPIATTPSLTTQTTLIATTPSLT 719
Query: 620 SQTT 631
+QTT
Sbjct: 720 TQTT 723
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 27.9 bits (59), Expect = 7.7
Identities = 26/92 (28%), Positives = 30/92 (32%), Gaps = 4/92 (4%)
Frame = +2
Query: 329 HTFYNELRVAP--EEHPVLLTEAPLNPKAN--REKMTQIMFETFNTPAMYVAIQAVLSLY 496
HT N AP HP L P+A M + ET P M V
Sbjct: 276 HTISNPAMAAPWVTPHPATLPVTLFTPQAAPVTPPMGAQLPET-EQPQMVAPSSTVTPPV 334
Query: 497 ASGRPPVSCWTPATVSPTPCPSTKDTHSPTPS 592
PP S P PTP + +P PS
Sbjct: 335 TEPAPPSSVVAPPPAVPTPATAPPPVVAPPPS 366
>SB_17678| Best HMM Match : zf-C2H2 (HMM E-Value=8.3e-16)
Length = 284
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 245 EQKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLN 400
E I + + +E G W+D+ + HTF +L + A E +P L+E PLN
Sbjct: 37 ESTFINSREVKLEKGKNQAWEDLRSVNAHTFDVKLFKEADESYP--LSEKPLN 87
>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
Length = 461
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Frame = +1
Query: 379 AH*GSPQPQGQQREDDPDHVRNIQHARHVRRHP---SRALAVRVRSSTGIVLDSGDGVSH 549
+H G+ P P H + H RHP +++ V R T + S +H
Sbjct: 161 SHTGTKSPMLSTHGTTPSHGYQVNHGLRTVRHPHTGTKSTMVYARYDTLTRVPSHPCATH 220
Query: 550 TVPIYEGYALPHAI 591
GY + HA+
Sbjct: 221 GTTPSHGYQVTHAL 234
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,588,793
Number of Sequences: 59808
Number of extensions: 632885
Number of successful extensions: 2564
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 2111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2532
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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