Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1112
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 33 0.034
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 32 0.079
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 31 0.10
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 31 0.14
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 31 0.14
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 30 0.32
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 29 0.42
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.56
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 28 0.97
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 27 1.7
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 27 1.7
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 27 1.7
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.3
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 3.9
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 26 3.9
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos... 26 3.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.2
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 5.2
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 5.2
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 5.2
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 26 5.2
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 26 5.2
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 5.2
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 25 6.9
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 25 9.1
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 9.1
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 25 9.1
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 33.1 bits (72), Expect = 0.034
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 633 QRRYRTERPFSCSQCSARFTLRSNMERHVKQQH--PQHWSVRRPL 505
+R + + FSCS C+ F + RHV+Q H Q+ S RR L
Sbjct: 47 ERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLSERRML 91
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 31.9 bits (69), Expect = 0.079
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 630 RRYRTERPFSCSQCSARFTLRSNMERHVKQQH 535
R + + F C CS+ FT + RHV Q+H
Sbjct: 39 RSHTNSKAFICPHCSSSFTRSDVLNRHVNQKH 70
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 31.5 bits (68), Expect = 0.10
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 630 RRYRTERPFSCS--QCSARFTLRSNMERHVK 544
R + E+PF CS C RFT R + RHV+
Sbjct: 24 RSHTGEKPFECSYPSCKKRFTRRDELIRHVR 54
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 31.1 bits (67), Expect = 0.14
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 618 TERPFSCSQCSARFTLRSNMERH 550
++R F C QC+ RFT N+ RH
Sbjct: 27 SKRVFPCDQCAKRFTRHENLTRH 49
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 31.1 bits (67), Expect = 0.14
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 197 KPVPIAEKTESGPDPTPGQDLLTVPVVPTRSDEEEDEEGLVAS 69
KPV + P + + PV P SDE+ED++ L AS
Sbjct: 281 KPVLLTAPRRKNKSPKKSKPAVFKPVKPIFSDEDEDDDDLTAS 323
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 29.9 bits (64), Expect = 0.32
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 491 WGASLSGLRTLQCWGCCC 544
W S+SGL TL CWG C
Sbjct: 436 WMLSISGLGTLFCWGSIC 453
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 29.5 bits (63), Expect = 0.42
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -1
Query: 615 ERPFSCSQ--CSARFTLRSNMERH 550
ERPF C C F +RSNM RH
Sbjct: 493 ERPFVCDYAGCGKAFNVRSNMRRH 516
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.56
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -2
Query: 191 VPIAEKTESGPDPTPGQDLLTVPVVPTRSDEEEDEEGLVASTSE---GNNSGSDENKSES 21
V I EK ES D + + + + S E E+EE +V T E G++ S +++S S
Sbjct: 154 VKIEEKKESSSDSS-SESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSS 212
Query: 20 D 18
D
Sbjct: 213 D 213
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 0.97
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 624 YRTERPFSCS--QCSARFTLRSNMERHVKQQH 535
Y+ R +SCS +C+ RF +M RH+ H
Sbjct: 343 YKEAREYSCSFPECNYRFKRLYDMHRHLNSHH 374
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -1
Query: 633 QRRYRTERPFSCSQ--CSARFTLRSNMERHVK 544
+R + +PFSC C A+F + ++ERH++
Sbjct: 74 KRCHTNVKPFSCHYDGCDAQFYTQQHLERHIE 105
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 27.5 bits (58), Expect = 1.7
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -1
Query: 612 RPFSCSQCSARFTLRSNMERHVKQQH 535
+ F C +CS +F ++ RH++ H
Sbjct: 421 KSFVCPECSKKFKRSEHLRRHIRSLH 446
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 1.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -1
Query: 618 TERPFSCSQCSARFTLRSNMERHVK 544
++RP+ C C A F +++RH++
Sbjct: 469 SDRPYRCDLCKAGFVRHHDLKRHLR 493
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 134 LTVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESD 18
+T PV+P D++E ++ A EG++ S E+ S D
Sbjct: 169 ITNPVIPADEDDDEYQDLPAAKRHEGDSIKSTEHDSTLD 207
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 107 SDEEEDEEGLVASTSEGNNSGSDENKSESDVA 12
SD+EEDEEG S E + SD SES ++
Sbjct: 231 SDDEEDEEG---SADEEDEEDSDVELSESSLS 259
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 3.9
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -2
Query: 239 NKDFDLKIAGNLINKPVPIAEKTESGPDPTPGQDLLTVPVVPTRSDEEEDEEGLVASTSE 60
N+D D+K A L K +P + + S P+ +++ T ++EE + + S E
Sbjct: 260 NEDEDIKRAIELSLKEMPQSREPPSYERPSEANVVISQDQHLTEDEDEELKRAIAISLEE 319
Query: 59 GNNSG-SDEN 33
S D+N
Sbjct: 320 AQKSSQKDDN 329
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 432 TLNDHCSQRDRRRDETLMKSPIMKKMRTTP**LTRKR 322
T+ DH ++R+ RR+ T S RT+ L RKR
Sbjct: 158 TVTDHSNRRESRRESTYYDSRERNGKRTSRSTLDRKR 194
>SPAC1952.07 |rad1||checkpoint clamp complex protein
Rad1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 140 DLLTVPVVPTRSDEEEDEEGLVASTSEGNNS 48
D VP+ DEEEDEE A +++ +N+
Sbjct: 274 DFCIVPLDLVSEDEEEDEEEEPAESNQSDNN 304
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -2
Query: 188 PIAEKTESGPDPTPGQDLLTVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESD 18
P ++ S P P +D L +P + DE+E + + + + +DENK E+D
Sbjct: 4067 PDIQENNSQPPPE-NEDHLDLPE-DLKLDEKEGDVSKDSDLEDMDMEAADENKEEAD 4121
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 104 DEEEDEEGLVASTSEGNNSGSDENKSESD 18
DEEE+E+ E N+ G DE+++E+D
Sbjct: 251 DEEEEEDD-----DENNDEGDDEDENEND 274
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 107 SDEEEDEEGLVASTSEGNNSGSDENKSESD 18
SDE + S+SE N+S S + SES+
Sbjct: 109 SDESDSSSSESESSSEDNDSSSSSSDSESE 138
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = -2
Query: 290 SPTSSCRNTDGFRQQEINKDFDLKIAGNLINKPVPIAEKTESGPDPTPGQDLLTVP-VVP 114
S T S RN ++ K LKI + + V + +K S P+P+ P P
Sbjct: 455 SSTLSPRNGFAPIVKQQKKSSALKIVNPVTHTEVVVPQKNASSPNPSETNSRAETPTAAP 514
Query: 113 TRSDEEE 93
+ EEE
Sbjct: 515 PQISEEE 521
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = -1
Query: 630 RRYRTERPFSCSQ-------CSARFTLRSNMERHVKQQH--PQHWSVRRPLKEAPH 490
R + E+PF+CS+ C +F+ R + RH ++ H PQ RR P+
Sbjct: 90 RSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHRNPQPRRRRRSTTALPN 145
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/93 (20%), Positives = 36/93 (38%)
Frame = -2
Query: 281 SSCRNTDGFRQQEINKDFDLKIAGNLINKPVPIAEKTESGPDPTPGQDLLTVPVVPTRSD 102
S NT G N +L ++GN+ P + SGP P D+ +P + +
Sbjct: 146 SPANNTSGNNITSPNVRGELDMSGNIAMSGGPTNTASTSGPVP---HDMTVLPQTDSNTS 202
Query: 101 EEEDEEGLVASTSEGNNSGSDENKSESDVAQPP 3
+ S + + +G++ + + A P
Sbjct: 203 NLMSSGSQLGSFATASTNGNNSTTTTTSSAAHP 235
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 609 PFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPLKEAPHL 487
P C C+A F+ ++H+K H + R L + P L
Sbjct: 207 PRDCLFCAASFSSFDTCKKHMKASHSLYIPEREYLVDEPSL 247
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 612 RPFSCSQCSARFTLRSNMERHVKQQH 535
RPF CS C F + + RH +Q H
Sbjct: 598 RPFQCSICKKSFARQHDKRRH-EQLH 622
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 290 SPTSSCRNTDGFRQQEINKDFD 225
SP S C N D F Q ++ D++
Sbjct: 305 SPDSHCFNADSFLDQTLSDDYE 326
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 116 PTRSDEEEDEEGLVASTSEGNNSGSDENKSESD 18
PT ++ +++E+G A EG N + N+ E D
Sbjct: 10 PT-TNGDKNEDGYPAENGEGTNVDDNNNEEEKD 41
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -2
Query: 140 DLLTVPVVPTRSDEEEDEEGLVASTSEGNNSG-SDENKSESD 18
D P V +DEEE+EE E + G DE + E D
Sbjct: 163 DFDDAPPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEED 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,316
Number of Sequences: 5004
Number of extensions: 46358
Number of successful extensions: 207
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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