Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1112
(633 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g58070.1 68416.m06473 zinc finger (C2H2 type) family protein ... 32 0.36
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 30 1.5
At1g29280.1 68414.m03580 WRKY family transcription factor simila... 30 1.5
At5g11270.1 68418.m01316 expressed protein 29 1.9
At2g13790.1 68415.m01522 leucine-rich repeat family protein / pr... 29 2.6
At5g10660.1 68418.m01234 calmodulin-binding protein-related cont... 29 3.4
At1g47970.1 68414.m05343 expressed protein 29 3.4
At5g35220.1 68418.m04176 peptidase M50 family protein / sterol-r... 28 4.5
At3g57930.1 68416.m06457 expressed protein 28 4.5
At1g15620.1 68414.m01877 expressed protein ; expression supporte... 28 4.5
At1g09790.1 68414.m01098 phytochelatin synthetase-related contai... 28 4.5
At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger) fa... 28 5.9
At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger) fa... 28 5.9
At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger) fa... 28 5.9
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 28 5.9
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 28 5.9
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 28 5.9
At1g60640.1 68414.m06826 expressed protein 28 5.9
At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa... 27 7.8
At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa... 27 7.8
At5g02590.1 68418.m00194 chloroplast lumen common family protein... 27 7.8
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha... 27 7.8
At2g02790.1 68415.m00222 calmodulin-binding family protein very ... 27 7.8
>At3g58070.1 68416.m06473 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 253
Score = 31.9 bits (69), Expect = 0.36
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -2
Query: 197 KPVPIAEKTESGPD--PTPGQDLLTVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSE 24
KP+ + K +G D T GQ+ T P T++ EEE+EE S NNS S + E
Sbjct: 34 KPIRVFGKDFTGRDFSITTGQEDYTDPY-QTKNKEEEEEEDQTGDNSTDNNSISHNRRFE 92
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 221 KIAGNLINKPVPIAEKTESGPDPTPGQDLLTVP 123
+I GNL+ K V + +T PDPT D L VP
Sbjct: 347 RIRGNLMGKRVDFSARTVITPDPTINIDELGVP 379
>At1g29280.1 68414.m03580 WRKY family transcription factor similar
to DNA binding protein WRKY3 GB:U56834 GI:1432055 from
[Petroselinum crispum]
Length = 259
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/86 (24%), Positives = 33/86 (38%)
Frame = -2
Query: 293 CSPTSSCRNTDGFRQQEINKDFDLKIAGNLINKPVPIAEKTESGPDPTPGQDLLTVPVVP 114
CS T C + + L + N P P+ T +GP P P P V
Sbjct: 99 CSSTKGCPARKQVERSRDDPTMILITYTSEHNHPWPLTSSTRNGPKPKPEPKPEPEPEVE 158
Query: 113 TRSDEEEDEEGLVASTSEGNNSGSDE 36
++EE+++ ++ E S DE
Sbjct: 159 PEAEEEDNKFMVLGRGIETTPSCVDE 184
>At5g11270.1 68418.m01316 expressed protein
Length = 354
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 224 LKIAGNLINKPVPIAEKTESGPDPTPGQDLLTVPVVPTRSDEEEDE 87
L ++ L ++ P+A S PDP+P + L VV ++ +DE
Sbjct: 233 LMLSATLPDEKPPVAAPENSSPDPSPVESLSAEDVVVEPKEKVKDE 278
>At2g13790.1 68415.m01522 leucine-rich repeat family protein /
protein kinase family protein
Length = 620
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = -1
Query: 558 ERHVKQQHPQHWSVRRPLKEAPHLTPLRTLWP----IALNSPFWLITLNDHCSQRDRRRD 391
ER + + + SV L+E P P WP IAL S L L+DHC Q+ RD
Sbjct: 363 ERLLVYPYMANGSVASCLRERPEGNPALD-WPKRKHIALGSARGLAYLHDHCDQKIIHRD 421
>At5g10660.1 68418.m01234 calmodulin-binding protein-related
contains weak similarity to calmodulin-binding proteins
Length = 407
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 116 PTRSDEEEDEEGLVASTSEGNNSGSDENKSESDVAQP 6
P S EE++ + AST E DE+KS + +P
Sbjct: 236 PDESGEEKETSPVAASTEEQKGELIDEDKSTEQIEEP 272
>At1g47970.1 68414.m05343 expressed protein
Length = 198
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -2
Query: 179 EKTESGPDPTPGQDLLTVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESD 18
E+ E D Q L ++ P +S E+EDEEG +GN D++ + D
Sbjct: 56 EEEEDDDDDDDVQVLQSLGGPPVQSAEDEDEEG----DEDGNGDDDDDDGDDDD 105
>At5g35220.1 68418.m04176 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 548
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -2
Query: 122 VVPTRSDEEEDEEGLVAS--TSEGNNSGSDENKSESDV 15
VV T + EEEDEE +S TS N GSD+ S +
Sbjct: 79 VVKTATFEEEDEETSKSSSTTSSSNEFGSDKTSMPSTI 116
>At3g57930.1 68416.m06457 expressed protein
Length = 141
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 125 PVVPTRSDEEEDEEGLVASTSEGNNSGSDENKS 27
P P + DEEE+EE LV T E + D N S
Sbjct: 36 PQKPVK-DEEEEEEELVKKTDEEEDKDDDTNGS 67
>At1g15620.1 68414.m01877 expressed protein ; expression supported
by MPSS
Length = 343
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -2
Query: 158 DPTPGQDLLTVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDV 15
DP Q V V D +EE +V T+ GN S +DE + V
Sbjct: 3 DPLLTQSEHIVDDVTIHGDSSSNEEHIVDVTTNGNPSSADEKRPHEGV 50
>At1g09790.1 68414.m01098 phytochelatin synthetase-related contains
Pfam profile PF04833: Phytochelatin synthetase-like
conserved region
Length = 454
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 603 SCSQCSARFTLRSNMERHVKQQHPQHWSVRRPLKEAPHLTPLRTLWPIALN-SPFWLITL 427
SC S+ + +++Q+H V +K + H+ P+R W + +N +W + +
Sbjct: 251 SCGCSSSHCVKDGELPPYLEQKHDPDEEVSPVVKCSDHMCPIRIHWHVKVNYREYWRVKI 310
>At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 102 VTACRYNWNGQQILSWCRVGSRFCFLCY 185
+T+C++ ++ Q IL WC+ S+ C +C+
Sbjct: 48 LTSCKHEYHLQCILEWCQRSSQ-CPMCW 74
>At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 102 VTACRYNWNGQQILSWCRVGSRFCFLCY 185
+T+C++ ++ Q IL WC+ S+ C +C+
Sbjct: 48 LTSCKHEYHLQCILEWCQRSSQ-CPMCW 74
>At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 102 VTACRYNWNGQQILSWCRVGSRFCFLCY 185
+T+C++ ++ Q IL WC+ S+ C +C+
Sbjct: 48 LTSCKHEYHLQCILEWCQRSSQ-CPMCW 74
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 182 AEKTESGPDPTPGQDLLTVPVVPTRSDEEEDEEGLVASTSE 60
+++ + PD P D VPV ++EEDEE S E
Sbjct: 45 SDEEDVAPDEAPVSDDEVVPVEDDAEEDEEDEEKAEISKRE 85
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 182 AEKTESGPDPTPGQDLLTVPVVPTRSDEEEDEEGLVASTSE 60
+++ + PD P D VPV ++EEDEE S E
Sbjct: 45 SDEEDVAPDEAPVSDDEVVPVEDDAEEDEEDEEKAEISKRE 85
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 104 DEEEDEEGLVASTSEGNNSGSDENKSESD 18
+EEEDEEG G + G D+ K E+D
Sbjct: 671 EEEEDEEG---DEKRGRSRGKDKKKQETD 696
>At1g60640.1 68414.m06826 expressed protein
Length = 340
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 113 TRSDEEEDEEGLVASTSE-GNNSGSDENKSESDVA 12
T E+ +EE VA SE G++SG DE+ + + A
Sbjct: 31 TEESEQSEEEDSVAEVSEDGDDSGDDESPAAGEDA 65
>At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 885
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -2
Query: 227 DLKIAGNLI----NKPVPIAEKTESGPDPTPGQDLLTVPVVPTRSDEEEDEEGLV 75
D ++G L+ + P+ + + G P + +VPVVP + E +GLV
Sbjct: 688 DADVSGGLVGLHHHSPLNCSPEINGGYTMAPETSMASVPVVPGSTGRSEANDGLV 742
>At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 873
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -2
Query: 227 DLKIAGNLI----NKPVPIAEKTESGPDPTPGQDLLTVPVVPTRSDEEEDEEGLV 75
D ++G L+ + P+ + + G P + +VPVVP + E +GLV
Sbjct: 688 DADVSGGLVGLHHHSPLNCSPEINGGYTMAPETSMASVPVVPGSTGRSEANDGLV 742
>At5g02590.1 68418.m00194 chloroplast lumen common family protein
various predicted proteins, Arabidopsis thaliana
Length = 326
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -2
Query: 209 NLINKPVPIAEKTESGPDPTPGQDLLTVPVVPTRSDEEEDEEGLVASTSEGNN 51
+L KPV A P P+ D LT + +R EEE+E L ++ N
Sbjct: 76 HLSTKPVTAATLVSPPPPPSTAAD-LTSDQISSRPKEEEEEAALEKHLTKNPN 127
>At4g36080.1 68417.m05136 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF00454: Phosphatidylinositol 3-
and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
Length = 3839
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 232 SLLISCCRKPSVFRQLLVGLQYVLRTWF 315
+LL++C S+ ++LLV L++VL T F
Sbjct: 287 NLLVTCSDSASIRKELLVSLKHVLGTDF 314
>At2g02790.1 68415.m00222 calmodulin-binding family protein very low
similarity to SP|P12036 Neurofilament triplet H protein
{Homo sapiens}; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 636
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -2
Query: 221 KIAGNLINKPVPIAEKTESGPDPTPGQDLLTVPV-VPTRSDEEEDEEGLVASTSEGNNSG 45
K + + K +PI E + S D + + +PV + SD ++DE+ LV E +
Sbjct: 377 KEIADAVQKELPIEEVSVSLVDAPEDEKMNLIPVTISKESDLDKDEKSLVLDKPEQDELR 436
Query: 44 SDENKSESD 18
+ E +++
Sbjct: 437 TAERDDKAE 445
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,619,787
Number of Sequences: 28952
Number of extensions: 258631
Number of successful extensions: 1282
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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