Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1111
         (697 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3LZF3 Cluster: Predicted protein; n=2; Saccharomycetac...    37   0.54 
UniRef50_Q38FC4 Cluster: Putative uncharacterized protein; n=1; ...    34   3.8  
UniRef50_Q55EQ9 Cluster: Putative uncharacterized protein; n=1; ...    33   8.8  

>UniRef50_A3LZF3 Cluster: Predicted protein; n=2;
           Saccharomycetaceae|Rep: Predicted protein - Pichia
           stipitis (Yeast)
          Length = 365

 Score = 36.7 bits (81), Expect = 0.54
 Identities = 21/80 (26%), Positives = 38/80 (47%)
 Frame = +3

Query: 306 IQLLQYNTMSVTITKCWKLFKLKVNNTRINHKKRIFIFKILLYDSVVKIGSCQFN*SVKN 485
           I  +  +T S  + K  KL+   +N T+++H  R   +K LLY++      C  +  V  
Sbjct: 180 ISKIHDDTASAALEKLIKLYSNDINTTKLDHNARYTRWKKLLYNATYNTVCCLCDLDVGK 239

Query: 486 IYSLSLNNK*L*RHIFVLLK 545
           +Y L   +  +   I+ L+K
Sbjct: 240 VYELKDTDNIIDEVIYPLMK 259


>UniRef50_Q38FC4 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 159

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 44  SVHFV*NFIIVLMKTI*FFC-LLHWDFFVFIILQHLIFMRLVQFTITILFKLNNCQLILK 220
           +VHF   F +VL   + FF  L+H   F FIIL HL     + F++ +     +C  I  
Sbjct: 85  TVHFFFPFHLVLCSPVLFFSFLIH---FNFIILLHLPTFFFLFFSLVMFPSFYHCAAIAF 141

Query: 221 SFFL 232
           SFFL
Sbjct: 142 SFFL 145


>UniRef50_Q55EQ9 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 425

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 21/72 (29%), Positives = 39/72 (54%)
 Frame = +3

Query: 297 NVFIQLLQYNTMSVTITKCWKLFKLKVNNTRINHKKRIFIFKILLYDSVVKIGSCQFN*S 476
           N++I  L +N  S+   K  ++ + +   + +N+ +R FI KI+ Y   +KIG    N +
Sbjct: 11  NIYISRLIFN-YSILYKKN-EVVRFEDRESLLNYTEREFIRKIVYYGKELKIGDLPNNGA 68

Query: 477 VKNIYSLSLNNK 512
           +K I   S+N +
Sbjct: 69  LKEISFRSINQR 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 569,362,099
Number of Sequences: 1657284
Number of extensions: 10408670
Number of successful extensions: 19253
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19248
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)