Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1111
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    26   4.5  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   5.9  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   5.9  

>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 663 WIKNLKFDVETCTYHIMHVCTFH 595
           W   L+F++ + +YHIM +  FH
Sbjct: 55  WNAVLEFNIPSESYHIMKITVFH 77


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 107 LHWDFFVFIILQHLIFMRLVQFTITIL 187
           LH  FF + IL HL F+ +  +  +IL
Sbjct: 352 LHQSFFFYFILDHLHFISIGNYMPSIL 378


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 546 HFIVNYHADYHNSEG*YEMCTHALCGMYRFRHQTSSFLSTYSVSFLCSK 692
           H  +   +D+    G    CT       +   + +SFLS  S+  LCSK
Sbjct: 305 HLQLTLFSDFQKELGDLVFCTQTSLQQRQKLEEITSFLSFNSLKSLCSK 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,778
Number of Sequences: 5004
Number of extensions: 49802
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)