Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1111
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016445-3|AAC69063.2|  372|Caenorhabditis elegans Serpentine re...    29   3.2  
AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical ...    28   5.5  
U97000-11|AAC47993.1|  321|Caenorhabditis elegans Serpentine rec...    27   9.7  
AC024817-42|AAF59576.2|  340|Caenorhabditis elegans Hypothetical...    27   9.7  

>AF016445-3|AAC69063.2|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein133 protein.
          Length = 372

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = -2

Query: 201 LFNLNRIVIVN*TRRMKIRCCNIMNTKKSQ*SRQKN*IVFINTIM 67
           LF +  I+++N  RR+ ++  +  ++ K++ S+ +  +VF NTI+
Sbjct: 236 LFPIITIILINELRRIDVKRKSSTSSNKAKDSQNRTKLVFYNTIL 280


>AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical
           protein T22B11.4b protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 55  CMKFHYSINENNLIFLSASLGLLCIHNIATSDFHASCSIHNYN 183
           C   +  I  NNL F+S+ + L C+ +    D        NYN
Sbjct: 562 CSNLNLQILLNNLFFISSQIALKCVQSRPIFDLFEVSLHENYN 604


>U97000-11|AAC47993.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 33 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +1

Query: 31  ILNTVSTF---CMKFHYSINENNLIFLSASL 114
           I+N  S +   CM +  SI E NL+F+S SL
Sbjct: 194 IINIASFYKLTCMTYKISIAERNLLFMSGSL 224


>AC024817-42|AAF59576.2|  340|Caenorhabditis elegans Hypothetical
           protein Y54G2A.22 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 663 WIKNLKFDVETCTYHIMHVCTFHIIP 586
           W++N     +  T H+ H+C F ++P
Sbjct: 315 WLQNRSTFRQLSTLHVHHLCKFSVVP 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,180,864
Number of Sequences: 27780
Number of extensions: 274545
Number of successful extensions: 502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)