Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1111
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.5  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 522 RHIFVLLKHFIVNYHA 569
           +H+FV L  FI N HA
Sbjct: 556 QHLFVELDQFIQNLHA 571


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 148 DFHASCSIHNYN 183
           +FH  C+++NYN
Sbjct: 151 NFHPRCAVNNYN 162


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 651 LKFDVETCTYHIMHVCTFHI 592
           + FDV +CT  I+++C   +
Sbjct: 118 VSFDVLSCTASILNLCMISV 137


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 653 FFIHLFSFVPLLKTW 697
           F++  F+ +PLLK W
Sbjct: 180 FWVTPFTVLPLLKVW 194


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 653 FFIHLFSFVPLLKTW 697
           F++  F+ +PLLK W
Sbjct: 180 FWVTPFTVLPLLKVW 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,585
Number of Sequences: 438
Number of extensions: 3652
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)