Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1110
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    28   1.0  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    28   1.4  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.3  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   9.6  

>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 157 SKMHTRVRERRLFGSDGGDQHLWRQRSKVILYTTSAGTS 273
           S + TRV+    F   GG QHL+R  S V++ T  + +S
Sbjct: 29  STIITRVQSSLSFQQAGGFQHLYRGLSSVLVSTLPSASS 67


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 110 RVGSKRASCYKSDGKPQRCIPEFENAAYLVQ 202
           +VG KR  C+++ G    C  EFEN  Y ++
Sbjct: 449 QVGYKRL-CFRTKGNGPMCFVEFENIPYAME 478


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 475 RPQSFAIYKKTTKTKFGSH--SNIS-VPHVEKLTELKSRKVLN 594
           +P+  A   KT  + FGSH  SN S VP   KLT  KS  + N
Sbjct: 400 KPKEKATLGKTVNSFFGSHSTSNYSKVPLSAKLTGEKSDDLSN 442


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 190 GGVLELWYASLRFSIGFITRGSFRADPRRLVIILSHGYAQDTEQI 56
           GG+ + +  S+  ++  I  G F      L+   +H YAQD E++
Sbjct: 718 GGLTKEFLTSICKTVFDINYGLFSETKAHLLYPNTHAYAQDVERL 762


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,863
Number of Sequences: 5004
Number of extensions: 59443
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)