Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1110
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114...    30   1.9  
11_04_0347 + 16628129-16628244,16628343-16628512,16629141-166294...    29   3.3  
01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887...    28   5.7  
12_02_0956 + 24776359-24779085                                         28   7.5  
05_05_0112 - 22480639-22480905,22480991-22481287,22481707-224818...    27   9.9  
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945...    27   9.9  
02_01_0590 + 4376785-4377009,4378153-4378407,4378514-4378641,437...    27   9.9  

>02_04_0449 +
           23010099-23010317,23010873-23010934,23011399-23011450,
           23011803-23011917,23012024-23012118,23012852-23012958,
           23013042-23013156,23014159-23014203,23014324-23014392
          Length = 292

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 1   NRRRLHALRQNGAAAHLHIFAQYLERSRGSELLPNAEGR--L*TSLLL*IRWKTSKMHTR 174
           NRR+  A   +GAAA     +   +R RG +  P   G      SLL  +R + S  H R
Sbjct: 25  NRRKHQASSSSGAAASASPPSPPAKRQRGDDAAPKGRGSKPKPASLLDKMRARLSGGHFR 84

Query: 175 VRERRLFGSDGGD 213
           +   +L+   G D
Sbjct: 85  MLNEKLYTCSGQD 97


>11_04_0347 +
           16628129-16628244,16628343-16628512,16629141-16629409,
           16630337-16630475,16630573-16630639,16630721-16630842,
           16630946-16631085
          Length = 340

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 346 DNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDI 444
           + Q +W  E++K   Q PN+ NLT   G  +D+
Sbjct: 107 EEQCYWIRESLKTFPQPPNRTNLTALYGPIFDL 139


>01_07_0041 +
           40688242-40688278,40688396-40688502,40688612-40688707,
           40688859-40688915,40689033-40689194,40689310-40689394,
           40689648-40689738,40689813-40689977,40690121-40690240,
           40690330-40690402,40690482-40690650,40690741-40691651,
           40691839-40691931,40692065-40692255,40692343-40692455,
           40692757-40692783,40693915-40693949
          Length = 843

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -2

Query: 607 VSAPNSALFCSSTP*VSRHEALKYWNGSQTLSSLSSCKLQNFEVEANKT 461
           VS   S    SST   +  + L +WNG  T+   S  + QNF  E N +
Sbjct: 520 VSPQPSLTVESSTQMHTDSKELHFWNGQSTVYGNSRDRPQNFRFEQNSS 568


>12_02_0956 + 24776359-24779085
          Length = 908

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 244 ILYTTSAGTSTRSCDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEG 387
           +++T S G++ R    C P + +   LT   HE  + +W       +G
Sbjct: 223 LVFTVSRGSAFRLLAECYPFETNRRLLTMFDHESQSVSWMAQSARAKG 270


>05_05_0112 -
           22480639-22480905,22480991-22481287,22481707-22481836,
           22482167-22482492,22482609-22482830,22483372-22483684,
           22483795-22483850
          Length = 536

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +3

Query: 492 NLQEDNEDKVWEPFQYFSASCRETYGVEEQKSAELGAETRALCTSEYSDISSLSG 656
           NLQ+D  D V    +   A     YG+  Q   ++G  T  L T+  +    L G
Sbjct: 419 NLQDDGHDTVQANVELGLAVDSREYGIGAQILRDMGVRTMRLMTNNPAKFVGLKG 473


>02_05_0895 -
           32593155-32593190,32594228-32594279,32594544-32594584,
           32594795-32594906,32595195-32595268,32595349-32595587,
           32595710-32596678,32596725-32596878,32596957-32597244,
           32597393-32597534,32598679-32598752,32598870-32598890
          Length = 733

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 86  AQNYYQTPRVGSKRASCYKSDGKPQRCIPE 175
           AQNY+ TP   S+       D  P +C+ E
Sbjct: 241 AQNYFSTPEGDSENVQSDDDDSGPSQCMRE 270


>02_01_0590 +
           4376785-4377009,4378153-4378407,4378514-4378641,
           4378738-4378779,4378875-4378956,4379035-4379103,
           4379180-4379350,4379430-4379495,4379777-4379845,
           4379928-4380056,4380845-4380881,4380906-4380997,
           4381541-4381602,4381855-4381918
          Length = 496

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 559 SRHEALKYWNGSQTLSSLSSCK 494
           + +E  K+W+G  TL  +S+CK
Sbjct: 408 NENEKYKFWSGLHTLEQVSNCK 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,362,112
Number of Sequences: 37544
Number of extensions: 394798
Number of successful extensions: 1056
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)