Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1110
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0) 79 4e-15
SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 8e-08
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) 44 1e-04
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0) 38 0.007
SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_4021| Best HMM Match : FYVE (HMM E-Value=2.3e-32) 30 1.9
SB_25926| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_53452| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_42932| Best HMM Match : zf-UBR1 (HMM E-Value=7.1) 28 5.8
SB_41307| Best HMM Match : zf-UBR1 (HMM E-Value=6.7) 28 5.8
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
>SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)
Length = 1465
Score = 78.6 bits (185), Expect = 4e-15
Identities = 39/77 (50%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Frame = +1
Query: 283 CDYCQPG-QFSSYYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRI 459
C+ P + + +TD+ + N+TWWQSET+ E P V LTL LGK+YD++Y+RI
Sbjct: 93 CNSSDPALEHPALKITDIK-DDTNRTWWQSETLLENPDKP--VTLTLDLGKSYDVSYIRI 149
Query: 460 VFYSPRPQSFAIYKKTT 510
F SPRP+S AIYKKTT
Sbjct: 150 RFRSPRPESMAIYKKTT 166
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +2
Query: 113 VGSKRASCYKSDGKPQRCIPEFENAAYLVQMEATNTCGDNGVKLYCIR 256
VG + CY S G+ QRC+P+F NAA+ ++ + NTCGD K +C++
Sbjct: 34 VGQLQIQCYDSQGRAQRCMPQFGNAAFGKRVISNNTCGD-PPKKFCVQ 80
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +3
Query: 522 WEPFQYFSASCRETYGVEEQKSAELGAETRALCTSEYSDISSLSG 656
W P+QYFSA+C +TYGV + + ALCT +S I+ L+G
Sbjct: 171 WIPYQYFSATCEKTYGVTTNGIVDPRNQQVALCTDAFSTITPLTG 215
>SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 54.4 bits (125), Expect = 8e-08
Identities = 29/61 (47%), Positives = 36/61 (59%)
Frame = +1
Query: 319 YLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRIVFYSPRPQSFAIY 498
YLTD+H+E +N T WQ++ +Q V L L GK YDITYV + F RP S IY
Sbjct: 100 YLTDVHNE-NNVTCWQADP----VQSRENVTLILSFGKTYDITYVSLQFCGIRPDSMGIY 154
Query: 499 K 501
K
Sbjct: 155 K 155
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +2
Query: 47 IYTYLLSI-LSVAVAQNYYQ-----TPRVGSKRASCYKSDGKPQRCIPEFENAAYLVQME 208
++TYL S L V V YQ G + CY + Q C P F + AY +
Sbjct: 1 MFTYLGSYHLKVGVLLCLYQGCVSILSAYGGQAKDCYNEFNRAQLCQPAFHDLAYNKDVY 60
Query: 209 ATNTCGDNGVKLYC 250
++TCG+ + +C
Sbjct: 61 VSHTCGEKS-RRFC 73
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 516 KVWEPFQYFSASCRETYGVEEQKSAELGAETRALCT 623
K W+ +Q++S+ C + YG E ALCT
Sbjct: 161 KSWQAYQFYSSRCEKMYGRVTNGEISPENEQVALCT 196
>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1706
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Frame = +1
Query: 355 TWWQSETMKE-------GIQYPNQVNLTLHLGKAYDIT-YVRIVFYSPRPQSFAIYK 501
TWWQS+T E I+ P +VN+TL GK Y ++ +++ FYS RP++ K
Sbjct: 112 TWWQSQTWWETNQLGLSSIENPPKVNITLSFGKRYQLSGHIKATFYSKRPKAMCFDK 168
>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1101
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 507 NEDKVWEPFQYFSASCRETYGVEEQKSAE-LGAETRALCTSEYSDIS 644
++ + W+P QY+S +CR+ +G+E E + A CT +YS S
Sbjct: 147 DKGQTWDPLQYYSFNCRKDFGMENTDPTENRFGDFSAKCTEKYSSSS 193
Score = 37.1 bits (82), Expect = 0.013
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Frame = +1
Query: 319 YLTDLHHEQDNQTWWQSETMKEGIQ-YPN---QVNLTLHLGKAYDIT-YVRIVFYSPRPQ 483
Y+ D D T+WQSET + Q P +VN+++ K YDIT ++ F SPRP
Sbjct: 80 YIADKSPGSD-ATFWQSETWWDWYQKNPRDDLKVNVSISFNKTYDITGHIMFTFESPRP- 137
Query: 484 SFAIYKKT 507
S AI +K+
Sbjct: 138 SKAILEKS 145
>SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 29.9 bits (64), Expect = 1.9
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -1
Query: 398 GYWIPSFIVSDCHH 357
GYW+P ++++CHH
Sbjct: 626 GYWVPDALITNCHH 639
>SB_4021| Best HMM Match : FYVE (HMM E-Value=2.3e-32)
Length = 255
Score = 29.9 bits (64), Expect = 1.9
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -1
Query: 398 GYWIPSFIVSDCHH 357
GYW+P ++++CHH
Sbjct: 188 GYWVPDALITNCHH 201
>SB_25926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 38 RPLIYTYLLSILSVAVAQNYYQTPRVGSKRASCYKS 145
RPL YTYL +++ + +N Y+ + R +C++S
Sbjct: 173 RPLPYTYLFTVVGQLLHRNRYEL--ISFTRLTCFRS 206
>SB_53452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 451 VRIVFYSPRPQSFAIYKK--TTKTKFGSHSNISVPHVEKLTELKSRK 585
V++ FYSP PQ+ + + ++F S S++ H L L +++
Sbjct: 117 VQLAFYSPGPQAIGVASRLAVPDSQFNSPSSLETMHSPALARLDTKQ 163
>SB_42932| Best HMM Match : zf-UBR1 (HMM E-Value=7.1)
Length = 271
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +1
Query: 238 KVILYTTSAGTSTRSCDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLT 417
K + T A R C C + S + D +E + +++Q ET +GI QVN
Sbjct: 38 KTVCSTNDAKCMERDCSKCDV-EGSVNDMFDECNEDQSVSYYQWETSDDGIVRKVQVN-- 94
Query: 418 LHLGKAYDITYVRI 459
+LG+A D V++
Sbjct: 95 CNLGEAKDDLIVQL 108
>SB_41307| Best HMM Match : zf-UBR1 (HMM E-Value=6.7)
Length = 243
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +1
Query: 238 KVILYTTSAGTSTRSCDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLT 417
K + T A R C C + S + D +E + +++Q ET +GI QVN
Sbjct: 119 KTVCSTNDAKCMERDCSKCDV-EGSVNDIFDECNEDQSVSYYQWETSDDGIVRKVQVN-- 175
Query: 418 LHLGKAYDITYVRI 459
+LG+A D V++
Sbjct: 176 CNLGEAKDDLIVQL 189
>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 122 KRASC-YKSDGKPQRCIPEFENAAYLVQMEATNTCGDNGV-KLYCIRHQLGRLQGPVTTV 295
K+ +C KS GK + P EN+ + ++ + TCG V ++YC + +L+ + +
Sbjct: 426 KKCACDKKSPGKGTQDKPRTENSTSVTKLWTSETCGSITVGEIYCKLKRPPKLKFEYSWM 485
Query: 296 NQDS 307
+D+
Sbjct: 486 KEDT 489
>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1574
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 516 KVWEPFQYFSASCRETY-GVEEQKSAELGAETRALCTSEYSDI 641
K W+ ++YFSA C + + G+ + + ++ +CT++YS +
Sbjct: 1228 KKWQIYRYFSADCDKIFPGIPKGEPKDI---DDVICTNKYSTV 1267
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,131,044
Number of Sequences: 59808
Number of extensions: 461446
Number of successful extensions: 1082
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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