Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1110
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 95 4e-20
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 50 2e-06
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 50 2e-06
U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated p... 46 2e-05
M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein. 46 2e-05
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 35 0.058
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 31 0.54
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 31 0.54
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 31 0.54
AC024809-10|AAF59547.1| 272|Caenorhabditis elegans Hypothetical... 30 1.3
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 29 2.2
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF098996-3|AAC68707.2| 349|Caenorhabditis elegans Serpentine re... 29 3.8
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 29 3.8
Z82055-7|CAB04849.1| 387|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z75714-9|CAN86912.1| 90|Caenorhabditis elegans Hypothetical pr... 27 8.9
U88178-4|AAC24411.1| 460|Caenorhabditis elegans Hypothetical pr... 27 8.9
U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical pr... 27 8.9
AL033514-29|CAA22090.1| 333|Caenorhabditis elegans Hypothetical... 27 8.9
AB070573-1|BAB63947.1| 294|Caenorhabditis elegans Ser/Thr prote... 27 8.9
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 95.1 bits (226), Expect = 4e-20
Identities = 50/88 (56%), Positives = 61/88 (69%), Gaps = 5/88 (5%)
Frame = +1
Query: 259 SAGTSTRS-CDYCQPGQ--FS--SYYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLH 423
S T RS C+ C FS + YLTD + +N+TWWQS+TM+EG QYP NLTL
Sbjct: 67 SGHTGQRSVCETCDDRHEGFSHPAKYLTDFN-VGNNETWWQSDTMQEGQQYPTTTNLTLV 125
Query: 424 LGKAYDITYVRIVFYSPRPQSFAIYKKT 507
LGK++DITYVR+ F SPRP+SF IYKKT
Sbjct: 126 LGKSFDITYVRLKFISPRPESFTIYKKT 153
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/57 (42%), Positives = 36/57 (63%)
Frame = +3
Query: 486 FCNLQEDNEDKVWEPFQYFSASCRETYGVEEQKSAELGAETRALCTSEYSDISSLSG 656
F ++ + D WEP+Q++S SCR TYG+ ++ G E A CT E+SDIS ++G
Sbjct: 147 FTIYKKTHTDSEWEPWQFYSGSCRATYGLSDRAPILPGNEATAQCTKEFSDISPITG 203
Score = 47.6 bits (108), Expect = 8e-06
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +2
Query: 116 GSKRASCY-KSDGKPQRCIPEFENAAYLVQMEATNTCGDNGVKLYCIR 256
G+ CY ++ +PQRC+P+F NAA+ ++++ TNTCG +C++
Sbjct: 19 GADGNPCYDRATRQPQRCVPDFVNAAFNLEVQVTNTCGTKRPTKFCVQ 66
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +1
Query: 283 CDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRI- 459
C +C G +S+ ++ N +WW S + G+Q+ N+VN+T+ L + + + YV I
Sbjct: 101 CGHCNAGNENSHPAANM--VDGNNSWWMSPPLSRGLQH-NEVNITIDLEQEFHVAYVWIQ 157
Query: 460 VFYSPRPQSFAIYKKTTKTK 519
+ SPRP S+ + + T K
Sbjct: 158 MANSPRPGSWVLERSTDHGK 177
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +1
Query: 283 CDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRI- 459
C +C G +S+ ++ N +WW S + G+Q+ N+VN+T+ L + + + YV I
Sbjct: 101 CGHCNAGNENSHPAANM--VDGNNSWWMSPPLSRGLQH-NEVNITIDLEQEFHVAYVWIQ 157
Query: 460 VFYSPRPQSFAIYKKTTKTK 519
+ SPRP S+ + + T K
Sbjct: 158 MANSPRPGSWVLERSTDHGK 177
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +1
Query: 283 CDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRI- 459
C +C G +S+ ++ N +WW S + G+Q+ N+VN+T+ L + + + YV I
Sbjct: 101 CGHCNAGNENSHPAANM--VDGNNSWWMSPPLSRGLQH-NEVNITIDLEQEFHVAYVWIQ 157
Query: 460 VFYSPRPQSFAIYKKTTKTK 519
+ SPRP S+ + + T K
Sbjct: 158 MANSPRPGSWVLERSTDHGK 177
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +1
Query: 283 CDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRI- 459
C +C G +S+ ++ N +WW S + G+Q+ N+VN+T+ L + + + YV I
Sbjct: 101 CGHCNAGNENSHPAANM--VDGNNSWWMSPPLSRGLQH-NEVNITIDLEQEFHVAYVWIQ 157
Query: 460 VFYSPRPQSFAIYKKTTKTK 519
+ SPRP S+ + + T K
Sbjct: 158 MANSPRPGSWVLERSTDHGK 177
>U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated
protein 6 protein.
Length = 612
Score = 46.0 bits (104), Expect = 2e-05
Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = +1
Query: 265 GTSTRSCDYCQP-GQFSSY---YLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGK 432
G CD C F S+ LTDL+ N T W S P V+LTL LGK
Sbjct: 83 GIIREQCDTCDARNHFQSHPASLLTDLN-SIGNMTCWVSTPSLS----PQNVSLTLSLGK 137
Query: 433 AYDITYVRIVFYSPRPQSFAIYK 501
+++TYV + F S P S A+YK
Sbjct: 138 KFELTYVSMHFCSRLPDSMALYK 160
Score = 44.8 bits (101), Expect = 5e-05
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 134 CYKSDGKPQRCIPEFENAAYLVQMEATNTCGDNGVKLYC 250
C+ G+P RC+PEF NAA+ + A++TCG N YC
Sbjct: 37 CHDHTGRPVRCVPEFINAAFGKPVIASDTCGTNRPDKYC 75
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 516 KVWEPFQYFSASCRETYGVEEQKSAELGAETRALCTSEY 632
K W PFQ++S+ CR +G + S E A+CT+ +
Sbjct: 166 KTWTPFQFYSSECRRIFGRDPDVSITKSNEQEAVCTASH 204
>M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein.
Length = 612
Score = 46.0 bits (104), Expect = 2e-05
Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = +1
Query: 265 GTSTRSCDYCQP-GQFSSY---YLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGK 432
G CD C F S+ LTDL+ N T W S P V+LTL LGK
Sbjct: 83 GIIREQCDTCDARNHFQSHPASLLTDLN-SIGNMTCWVSTPSLS----PQNVSLTLSLGK 137
Query: 433 AYDITYVRIVFYSPRPQSFAIYK 501
+++TYV + F S P S A+YK
Sbjct: 138 KFELTYVSMHFCSRLPDSMALYK 160
Score = 44.8 bits (101), Expect = 5e-05
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 134 CYKSDGKPQRCIPEFENAAYLVQMEATNTCGDNGVKLYC 250
C+ G+P RC+PEF NAA+ + A++TCG N YC
Sbjct: 37 CHDHTGRPVRCVPEFINAAFGKPVIASDTCGTNRPDKYC 75
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 516 KVWEPFQYFSASCRETYGVEEQKSAELGAETRALCTSEY 632
K W PFQ++S+ CR +G + S E A+CT+ +
Sbjct: 166 KTWTPFQFYSSECRRIFGRDPDVSITKSNEQEAVCTASH 204
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 34.7 bits (76), Expect = 0.058
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 516 KVWEPFQYFSASCRETY-GVEEQKSAELGAETRALCTSEYSDISSLSG 656
K W+ ++YF+ C ++ G+ E + T +CTS+YSD++ +G
Sbjct: 162 KTWQVYRYFAYDCDSSFPGIPEGPPKK---HTDVICTSQYSDVAPSTG 206
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +3
Query: 495 LQEDNEDKVWEPFQYFS---ASCRETYGVEEQKSA-ELGAETRALCTSEYSDISSL 650
L++ + + +EP+QY++ A C +G+ E CTSEYS I+ L
Sbjct: 164 LEKSLDGEYYEPWQYYAMQDAECMRQFGIPATTGVPRFQKEDEVHCTSEYSKITPL 219
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +3
Query: 495 LQEDNEDKVWEPFQYFS---ASCRETYGVEEQKSA-ELGAETRALCTSEYSDISSL 650
L++ + + +EP+QY++ A C +G+ E CTSEYS I+ L
Sbjct: 164 LEKSLDGEYYEPWQYYAMQDAECMRQFGIPATTGVPRFQKEDEVHCTSEYSKITPL 219
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +3
Query: 495 LQEDNEDKVWEPFQYFS---ASCRETYGVEEQKSA-ELGAETRALCTSEYSDISSL 650
L++ + + +EP+QY++ A C +G+ E CTSEYS I+ L
Sbjct: 164 LEKSLDGEYYEPWQYYAMQDAECMRQFGIPATTGVPRFQKEDEVHCTSEYSKITPL 219
>AC024809-10|AAF59547.1| 272|Caenorhabditis elegans Hypothetical
protein Y53G8AR.1 protein.
Length = 272
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 280 SCDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKE 384
SCDY G + Y LT N WW+++T+ E
Sbjct: 144 SCDYVCYGYCTKYDLTCYLTPTSNTAWWKNQTIGE 178
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 158 QRCIPEFENAAYLVQMEATNTCGDNGVKLYC 250
QRC + Y +Q+E NT G N + ++C
Sbjct: 88 QRCPNKLRVIGYSLQIEPNNTAGANNIAVFC 118
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 316 YYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLT-LHLGKAYDITYVRIVFYS 471
+ LT +H E+D+ T W T +E + N LT G A + YV YS
Sbjct: 1399 FILTVIHMERDSVTQWILSTFEEALTNTNHRRLTNSDRGPASFVFYVFDFIYS 1451
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 316 YYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLT-LHLGKAYDITYVRIVFYS 471
+ LT +H E+D+ T W T +E + N LT G A + YV YS
Sbjct: 1399 FILTVIHMERDSVTQWILSTFEEALTNTNHRRLTNSDRGPASFVFYVFDFIYS 1451
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical protein
E01G6.1 protein.
Length = 1391
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 424 NVGSNSLD*GTGFLPSLSPTATMSGCPARDEGLL 323
N G+N+ + G G +P A+ SGCP L+
Sbjct: 1097 NFGNNNFNMGGGAVPGFGNQASQSGCPLGSRPLI 1130
>AF098996-3|AAC68707.2| 349|Caenorhabditis elegans Serpentine
receptor, class w protein79 protein.
Length = 349
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Frame = +2
Query: 14 STRSDKMARP---LIYTYLLSILSVAVAQNYY 100
S R+DK+ARP + T+++S++S A++ YY
Sbjct: 129 SGRADKLARPSSGYLITFIISVISAALSGWYY 160
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 316 YYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLT-LHLGKAYDITYVRIVFYS 471
+ LT +H E+D+ T W T +E + N LT G A + YV YS
Sbjct: 1399 FILTVIHMERDSVTQWILSTFEEALTNTNHRRLTNSDRGPASFVFYVFDFIYS 1451
>Z82055-7|CAB04849.1| 387|Caenorhabditis elegans Hypothetical
protein T26H2.8 protein.
Length = 387
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 13 LHALRQNGAAAHLHIFAQYLE-RSRGSELL 99
+HAL QN A H+F + LE S+ ELL
Sbjct: 190 IHALIQNAIAREFHVFNEELEGASKNKELL 219
>Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical
protein K04G11.4 protein.
Length = 395
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 196 GSDGGDQHLWRQRSKVILYTTSAGTSTRSCDYCQPGQ 306
GS+ ++W +++ IL T + C C PGQ
Sbjct: 338 GSEDHKVYIWNLQTREILQTLDGHNTAVMCTDCHPGQ 374
>Z75714-9|CAN86912.1| 90|Caenorhabditis elegans Hypothetical
protein ZC434.7b protein.
Length = 90
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 101 QTPRVGSKRASCYKSDGKPQRCIPEFENAAYLVQMEATNTC 223
+ P + S+R CY++ + CI +F + + EATN+C
Sbjct: 4 EEPSLKSERRKCYEARDQYAACIDKFLSQG-KSEKEATNSC 43
>U88178-4|AAC24411.1| 460|Caenorhabditis elegans Hypothetical
protein W09C3.2 protein.
Length = 460
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 89 QNYYQTPRVGSKRASCYKSDGKPQ 160
Q Y+Q P+ GSKR S +S K Q
Sbjct: 249 QEYFQQPKSGSKRGSVRESTTKKQ 272
>U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical
protein F42A10.1 protein.
Length = 712
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 370 PTATMSGCPARDEGLLSNS*KTVLVDSSHRTL*TSQLMS 254
P+AT S P RD G + K + ++S ++ T QL+S
Sbjct: 157 PSATASQAPIRDSGARGANSKDIKLESVDISIGTKQLLS 195
>AL033514-29|CAA22090.1| 333|Caenorhabditis elegans Hypothetical
protein Y75B8A.30 protein.
Length = 333
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 185 AAYLVQMEATNT-CGDNGVKLYCIRHQL 265
A YL +A+ T C NGV L C HQL
Sbjct: 239 AGYLFGADASKTFCETNGVDLICRAHQL 266
>AB070573-1|BAB63947.1| 294|Caenorhabditis elegans Ser/Thr protein
phosphatase protein.
Length = 294
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 185 AAYLVQMEATNT-CGDNGVKLYCIRHQL 265
A YL +A+ T C NGV L C HQL
Sbjct: 200 AGYLFGADASKTFCETNGVDLICRAHQL 227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,499,140
Number of Sequences: 27780
Number of extensions: 333849
Number of successful extensions: 827
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -