Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1110
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   4.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.5  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/51 (27%), Positives = 18/51 (35%)
 Frame = +1

Query: 472 PRPQSFAIYKKTTKTKFGSHSNISVPHVEKLTELKSRKVLN*VRKLEPFAP 624
           P P       K  KTK    S  +   +EK      R  L  ++ L P  P
Sbjct: 29  PMPDDMRTVTKRPKTKKSQGSRTTHNELEKNRRAHLRNCLEKLKVLVPLGP 79


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 157 RFSIGFITRGSFRADPRRLVII 92
           R SIGF+TR   R     ++II
Sbjct: 245 RSSIGFLTRAKIRTLKMTVIII 266


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 470 RLDLKVLQFTRRQRRQSLGAIPI 538
           +LDLK +++TR     S   +PI
Sbjct: 677 KLDLKNMKYTRSADLSSYNCVPI 699


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 542 EILEWLPNFVFVVFL 498
           E+L W  N VFVV L
Sbjct: 19  ELLRWTKNMVFVVGL 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,967
Number of Sequences: 438
Number of extensions: 4039
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)