Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1110
(656 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15580.1 68418.m01824 expressed protein unknown protein F14P3... 29 2.1
At2g28605.1 68415.m03477 expressed protein 29 3.6
At1g65920.1 68414.m07480 regulator of chromosome condensation (R... 29 3.6
At5g27880.1 68418.m03344 zinc finger (C2H2 type) family protein ... 28 4.8
At3g09090.1 68416.m01069 defective in exine formation protein (D... 28 4.8
At2g29690.1 68415.m03609 anthranilate synthase, alpha subunit, c... 28 4.8
At5g64030.1 68418.m08039 dehydration-responsive protein-related ... 28 6.3
At3g18440.1 68416.m02344 expressed protein contains Pfam profile... 28 6.3
At5g67380.1 68418.m08496 casein kinase II alpha chain 1 identica... 27 8.3
At5g09380.1 68418.m01087 DNA-directed RNA polymerase III RPC4 fa... 27 8.3
At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identica... 27 8.3
>At5g15580.1 68418.m01824 expressed protein unknown protein F14P3.18
- Arabidopsis thaliana, EMBL:AC009755
Length = 927
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 426 GQSV*YYICPDSVLFASTSKFCNLQEDNEDKVWEPFQYFSASCRETYG 569
G+ + +C + SK C L ED+ED +WE Q + +E G
Sbjct: 838 GEELLQTLCSEIDRLQDNSK-CILDEDDEDLIWEDLQSHGMNWKEIEG 884
>At2g28605.1 68415.m03477 expressed protein
Length = 232
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 619 QRALVSAPNSALFCSSTP*VSRHEALKYWNGSQTLSSLSSCKL 491
Q L SAP LF SS P S H+ K++ +Q SS S L
Sbjct: 4 QSFLGSAPKLCLFSSSLPPFSHHKIHKFFCFAQNPSSTVSINL 46
>At1g65920.1 68414.m07480 regulator of chromosome condensation
(RCC1) family protein / zinc finger protein-related
contains Pfam profiles: regulator of chromosome
condensation (RCC1), PF01363 FYVE zinc finger
Length = 1006
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 81 PWLRIITKRRGSALNEPLVINPMENLKDAYQSSRTPPIW 197
P ++++T+R L E N M+NL A +SS P W
Sbjct: 716 PRMQMVTRRVSEDLTEKQSENEMQNLPQANRSSDGQPRW 754
>At5g27880.1 68418.m03344 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 278
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/86 (22%), Positives = 35/86 (40%)
Frame = +1
Query: 181 ERRLFGSDGGDQHLWRQRSKVILYTTSAGTSTRSCDYCQPGQFSSYYLTDLHHEQDNQTW 360
ERR+ S G + R R +++ + S +C +C+ G +S L + +
Sbjct: 49 ERRIENSSFGSSAVRRGR-EIMKFYPSKSNKIYTCHFCKKGFSTSQALGGHQNAHKQERE 107
Query: 361 WQSETMKEGIQYPNQVNLTLHLGKAY 438
W + + +YP L L K +
Sbjct: 108 WDKKRKEMEAEYPGLSFLNPFLDKPH 133
>At3g09090.1 68416.m01069 defective in exine formation protein
(DEX1) identical to defective in exine formation
[Arabidopsis thaliana] gi|11138669|gb|AAG31444; contains
Pfam domain PF01839: FG-GAP repeat
Length = 896
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 610 LVSAPNSALFCSSTP*VSRHEALKYWNGS 524
+VS N +FC STP S H LK W S
Sbjct: 709 IVSTMNGNVFCFSTP--SPHHPLKAWRSS 735
>At2g29690.1 68415.m03609 anthranilate synthase, alpha subunit,
component I-2 (ASA2) identical to SP|P32069
Length = 621
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 473 LDLKVLQFTRRQRRQSLG-AIPIFQCLMSRNLRS*RAEKC*IR 598
LDL QFT+ ++ G +P+F+C+ S +L A +C ++
Sbjct: 75 LDLSEEQFTKFKKASEKGNLVPLFRCVFSDHLTPILAYRCLVK 117
>At5g64030.1 68418.m08039 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 829
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 474 STSKFCNLQEDNEDKVWEPFQYFSASCRETYGVEEQK 584
S+SK N +E E+K E F S + ET G E+QK
Sbjct: 102 SSSKQDNQEEKKEEKTKEEFTPSSETKSETEGGEDQK 138
>At3g18440.1 68416.m02344 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 598
Score = 27.9 bits (59), Expect = 6.3
Identities = 23/101 (22%), Positives = 37/101 (36%)
Frame = +1
Query: 178 RERRLFGSDGGDQHLWRQRSKVILYTTSAGTSTRSCDYCQPGQFSSYYLTDLHHEQDNQT 357
RER L + D S +L + G TR C C G S + D+
Sbjct: 16 RERLLSNNGFSDFRFTDIESNDLLENENCGRRTRLCCCCSCGNLSE----KISGVYDDAK 71
Query: 358 WWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRIVFYSPRP 480
+ + G+ P ++ + +G A I + I + P P
Sbjct: 72 DVARKAWEMGVSDPRKIVFSAKIGLALTIVALLIFYQEPNP 112
>At5g67380.1 68418.m08496 casein kinase II alpha chain 1 identical
to casein kinase II, alpha chain 1 (CK II) [Arabidopsis
thaliana] SWISS-PROT:Q08467; contains protein kinase
domain, Pfam:PF00069
Length = 409
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +3
Query: 129 PLVINPMENLKDAYQSSRTPPIWFRWRRPTPVETTE*SYTVYDISWDVYKVL 284
P ++ ++ ++D Q S+TP + F + T + + T YDI + +Y++L
Sbjct: 163 PNIVKLLDVVRD--QHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELL 212
>At5g09380.1 68418.m01087 DNA-directed RNA polymerase III RPC4
family protein low similarity to SP|P25441 DNA-directed
RNA polymerase III 47 kDa polypeptide (EC 2.7.7.6) (C53)
(RNA polymerase C subunit 4) {Saccharomyces cerevisiae};
contains Pfam profile PF05132: RNA polymerase III RPC4
Length = 272
Score = 27.5 bits (58), Expect = 8.3
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Frame = +1
Query: 268 TSTRSCDYCQPGQFSSYYLTDL----HHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKA 435
TST+ +Y +P + SYY L + D + E M+ G + + +N +LG
Sbjct: 92 TSTQEIEYKEPWDYYSYYPITLPMRRPYAGDPEVLDVEEFMQAGGHHEDSLNTAANLGLM 151
Query: 436 YDITYVRIVFYSPRPQSFAIYKKTTKTKFGSHSNISVPHVEKLTELKS 579
D ++ F R S + T+ + NI P +K +LK+
Sbjct: 152 EDSGEQKMFFM--RLPSVPLASTPTE-NLETRPNIKGPVEKKTVDLKA 196
>At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identical
to casein kinase II, alpha chain 2 (CK II) [Arabidopsis
thaliana] SWISS-PROT:Q08466
Length = 403
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +3
Query: 129 PLVINPMENLKDAYQSSRTPPIWFRWRRPTPVETTE*SYTVYDISWDVYKVL 284
P ++ ++ ++D Q S+TP + F + T + + T YDI + +Y++L
Sbjct: 157 PNIVKLLDVVRD--QHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELL 206
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,683,444
Number of Sequences: 28952
Number of extensions: 314232
Number of successful extensions: 894
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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