Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1109
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2ENE9 Cluster: Putative uncharacterized protein; n=1; ...    36   0.72 
UniRef50_UPI00006CBFB8 Cluster: hypothetical protein TTHERM_0040...    36   0.96 
UniRef50_A0BKE8 Cluster: Chromosome undetermined scaffold_112, w...    35   2.2  
UniRef50_Q10T58 Cluster: RNA methyltransferase, TrmH family prot...    33   6.7  

>UniRef50_A2ENE9 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 484

 Score = 36.3 bits (80), Expect = 0.72
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 104 PTINKNNNTSEFVGNNFSTIESFPQKTKEGFYSYFLSVSL 223
           PT  +  N  E + N+FS ++  P + K  FY YF+ V L
Sbjct: 353 PTTIREYNHKEVIINSFSILDELPFQAKNAFYEYFIEVML 392


>UniRef50_UPI00006CBFB8 Cluster: hypothetical protein
           TTHERM_00408710; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00408710 - Tetrahymena
           thermophila SB210
          Length = 266

 Score = 35.9 bits (79), Expect = 0.96
 Identities = 23/78 (29%), Positives = 39/78 (50%)
 Frame = -1

Query: 374 CYICFNI*QSIPSKVLNSLNAY*FSLA*SV*LGKVRESPFVHSEICTNKQKERQKENNCK 195
           C +C+   + I ++VL+      F  A S    K++E  + H   C N+   RQKE   +
Sbjct: 12  CLVCYKE-EHIENQVLDCSCCICFECADSWFATKIKERKYDHRVKCPNQHCPRQKEYAYE 70

Query: 194 NLL*FSEGNFQLSKSYFQ 141
           +L+ F + N Q+  +Y Q
Sbjct: 71  DLIRFQKANDQMLINYCQ 88


>UniRef50_A0BKE8 Cluster: Chromosome undetermined scaffold_112,
           whole genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_112,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 429

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +2

Query: 95  EN*PTINKNNNTSEFVGNNFSTIE-SFPQKTKEGFY 199
           EN PT+NKNNN  +F  N F T + ++PQ+ ++ FY
Sbjct: 91  ENYPTVNKNNN--QFRTNKFMTDQTAYPQQYQDNFY 124


>UniRef50_Q10T58 Cluster: RNA methyltransferase, TrmH family protein,
            expressed; n=8; Oryza sativa|Rep: RNA methyltransferase,
            TrmH family protein, expressed - Oryza sativa subsp.
            japonica (Rice)
          Length = 1727

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
 Frame = +3

Query: 363  TNIAINTKLYSSVCLSVTFSRLRNGFD---EAW*ENRLSLGKLYKLPFI-SQLARVPHSR 530
            T + INT+LY+ V ++V F  L    +       E  L  GKL+ L  + S +     SR
Sbjct: 1175 TEVFINTELYARVSVAVLFDHLWKQIEVKSTLETEEALRSGKLFLLKLLDSAVNDKDISR 1234

Query: 531  DLYFRPRSPNRRRTKVY 581
            +LY +  S +RR+ +++
Sbjct: 1235 ELYKKYSSVHRRKVRIW 1251


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,274,690
Number of Sequences: 1657284
Number of extensions: 10922435
Number of successful extensions: 25069
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25014
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)