Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1109
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.1  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    27   3.4  

>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 224 FVC*YISLNVQKDFHVLFLVRLTKLD 301
           F+C Y +LN+    HV F+ R  K+D
Sbjct: 257 FLCVYFTLNLPHHNHVSFMTRFRKID 282


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 235 LTNKKRDRKKITVKTFFSFLRETF 164
           +TN    +KK +V + ++FLRETF
Sbjct: 356 MTNLDIWKKKFSVNSLYTFLRETF 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,108
Number of Sequences: 5004
Number of extensions: 50467
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)