Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1109
         (698 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052142-1|AAK93566.1| 1367|Drosophila melanogaster SD09926p pro...    30   2.6  
AF097636-1|AAF63187.1| 1368|Drosophila melanogaster bicoid-inter...    30   2.6  
AE013599-166|AAM68350.1| 1367|Drosophila melanogaster CG8276-PB,...    30   2.6  
AE013599-165|AAF57267.2| 1367|Drosophila melanogaster CG8276-PA,...    30   2.6  
AE014134-670|AAF51066.3| 1802|Drosophila melanogaster CG31772-PA...    29   8.0  

>AY052142-1|AAK93566.1| 1367|Drosophila melanogaster SD09926p protein.
          Length = 1367

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 44   RRLDSRMRAVTANVISCEN*PTINKNNNTSEFVGNNFSTIESFPQKTKEGFYSYFLS 214
            +R+ +++R     ++  +N  +  K  N +  + NN+  IE FP K    F+ Y LS
Sbjct: 1030 KRMFNQLRPGGKLILEAQNWASYKKKKNLTPEIYNNYKQIEFFPNK----FHEYLLS 1082


>AF097636-1|AAF63187.1| 1368|Drosophila melanogaster
            bicoid-interacting protein BIN3 protein.
          Length = 1368

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 44   RRLDSRMRAVTANVISCEN*PTINKNNNTSEFVGNNFSTIESFPQKTKEGFYSYFLS 214
            +R+ +++R     ++  +N  +  K  N +  + NN+  IE FP K    F+ Y LS
Sbjct: 1031 KRMFNQLRPGGKLILEAQNWASYKKKKNLTPEIYNNYKQIEFFPNK----FHEYLLS 1083


>AE013599-166|AAM68350.1| 1367|Drosophila melanogaster CG8276-PB,
            isoform B protein.
          Length = 1367

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 44   RRLDSRMRAVTANVISCEN*PTINKNNNTSEFVGNNFSTIESFPQKTKEGFYSYFLS 214
            +R+ +++R     ++  +N  +  K  N +  + NN+  IE FP K    F+ Y LS
Sbjct: 1030 KRMFNQLRPGGKLILEAQNWASYKKKKNLTPEIYNNYKQIEFFPNK----FHEYLLS 1082


>AE013599-165|AAF57267.2| 1367|Drosophila melanogaster CG8276-PA,
            isoform A protein.
          Length = 1367

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 44   RRLDSRMRAVTANVISCEN*PTINKNNNTSEFVGNNFSTIESFPQKTKEGFYSYFLS 214
            +R+ +++R     ++  +N  +  K  N +  + NN+  IE FP K    F+ Y LS
Sbjct: 1030 KRMFNQLRPGGKLILEAQNWASYKKKKNLTPEIYNNYKQIEFFPNK----FHEYLLS 1082


>AE014134-670|AAF51066.3| 1802|Drosophila melanogaster CG31772-PA
            protein.
          Length = 1802

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 565  RRFGLRGRKYKSRE*GTRANCEMKGSLYNFPRLNLFSYQASS 440
            R  G RGR YK+R+   RA  E +G + + P   +     SS
Sbjct: 1308 RYHGERGRHYKTRQENIRAKSEERGRIPSLPNTPVLRPAGSS 1349


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,918,925
Number of Sequences: 53049
Number of extensions: 482731
Number of successful extensions: 847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)