Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1109
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.91 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.4  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 113 NKNNNTSEFVGNNFSTIESFP 175
           N N N  ++   N+ T+ SFP
Sbjct: 367 NTNTNDQDYSSQNYLTVHSFP 387


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 570 FFADSGCVGENINRVSEGRVL 508
           F   +GCV    NR+S  RVL
Sbjct: 26  FRISAGCVSRISNRISRNRVL 46


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -1

Query: 275 KVRESPFVHSEICTNKQKERQKENNCKNLL-*FSEGNFQL 159
           K + +   H ++C     E  KE  C+N    F  G+F L
Sbjct: 18  KGKNASQAHKKLCAVYGDEALKERQCQNWFDKFRSGDFSL 57


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 396 SVCLSVTFSRLRNGFDEAW*ENRLSLGK 479
           +V L V FS+   GFDE   E++++L K
Sbjct: 385 TVQLIVEFSKRLPGFDELMREDQIALLK 412


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 499 MKGSLYNFPRLNLFSYQASSKPFLRRE 419
           M  +LY  P  +   Y  ++KPF++ E
Sbjct: 262 MTNNLYYSPLSSRSLYYVNTKPFMKSE 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,180
Number of Sequences: 438
Number of extensions: 3588
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)