Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1108
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    28   0.96 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.7  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   2.9  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   6.8  

>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 265 PHQNKTQFTIFEILTYHRFLSYTRTIVLCSQIDIIG 372
           P +NK + T++++L   +FLSYTR         +IG
Sbjct: 215 PSENKKE-TLYDVLFAPKFLSYTRNFYEIESSTVIG 249


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -1

Query: 278 LF*CGCANFEFLIEFYLQFTFYFGIVF----AKLIYFICFTIISIFRLLTYCV 132
           LF C    F FL+ F+L F+F F  +F      ++YF  F I+        CV
Sbjct: 112 LFRCLLLFFFFLL-FFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCV 163


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 537 PPFASWRNSEEARTDRPSQQLRSLN 611
           PP AS RN  E  +  PS+Q  S+N
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVN 377


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 440 PIVSRITIHWPSFYNVVTGKTLAYPT*SPCSTSPFRQL 553
           P++  +T+      +V+T KT AYP  S C    F  L
Sbjct: 318 PLLDTVTMVQSITPDVLTDKTAAYPYFSTCLDKEFMDL 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,389
Number of Sequences: 5004
Number of extensions: 51956
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)