Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1108
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032647-4|CAA21692.1|  360|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z83216-11|CAB05679.2|  404|Caenorhabditis elegans Hypothetical p...    28   6.3  
U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AC006673-5|AAF39919.2|  335|Caenorhabditis elegans Serpentine re...    28   6.3  
Z81062-14|CAB02947.2|  362|Caenorhabditis elegans Hypothetical p...    27   8.3  

>AL032647-4|CAA21692.1|  360|Caenorhabditis elegans Hypothetical
           protein Y57A10B.5 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 228 TIYVLFRHC--ICKVDLFYLLHNNFNISSTYLLCSW 127
           T Y++ R C  I K+ LF   H N NI   + LC W
Sbjct: 43  TAYIIVRTCKIITKIRLF---HENKNILMAFFLCQW 75


>Z83216-11|CAB05679.2|  404|Caenorhabditis elegans Hypothetical
           protein C08F11.13 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 203 VFAKLIYFICFTIISIFRLLTYCVVGHFNKTDY 105
           +F  L+ F  FTI S F  + YC       T+Y
Sbjct: 367 LFWALLTFCVFTIFSFFAKIVYCCYKKIRTTEY 399


>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 532 AARRLSWVRQGFPSHDVVKRRPVNC 458
           A  R+ W   G P+HD+   RP+ C
Sbjct: 229 ALHRIFWFYSGAPAHDMHHLRPLTC 253


>AC006673-5|AAF39919.2|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein8 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -1

Query: 206 IVFAKLIYFICFTIISIFRLLTYCVVGHFNK 114
           +++ + ++FIC   + IF +L+Y  + H N+
Sbjct: 133 VMYLRYMFFICVVFVCIFTILSYPDLKHQNE 163


>Z81062-14|CAB02947.2|  362|Caenorhabditis elegans Hypothetical
           protein F15A4.3 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 234 LFTIYVLFRHCICKVDLFYLLHNNFNISSTYLLCSW 127
           + T Y+L R C   + +  + H+N NI   + LC W
Sbjct: 42  ILTGYILVRICWIFLTI-KVFHDNMNIMMCWFLCQW 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,522,732
Number of Sequences: 27780
Number of extensions: 305185
Number of successful extensions: 792
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)