Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1108
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02800.1 68414.m00237 endo-1,4-beta-glucanase / cellulase (CE...    30   1.4  
At2g33060.1 68415.m04054 leucine-rich repeat family protein cont...    28   4.4  
At5g02620.1 68418.m00198 ankyrin repeat family protein contains ...    28   5.8  
At3g11290.1 68416.m01373 expressed protein                             27   7.7  

>At1g02800.1 68414.m00237 endo-1,4-beta-glucanase / cellulase (CEL2)
           identical to endo-1,4-beta glucanase; ATCEL2 GI:3132891
           from [Arabidopsis thaliana]
          Length = 501

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +1

Query: 253 KLAQPHQNKTQFTIFEILTYHRFLSYTRTIVLCSQIDIIGNKAKQVYTINISYSRGG 423
           K+ + +      T F +LTY ++L+  RT+  C    +   + + +    + Y  GG
Sbjct: 346 KMGESNMQYVTSTSFLLLTYAKYLTSARTVAYCGGSVVTPARLRSIAKKQVDYLLGG 402


>At2g33060.1 68415.m04054 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 808

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 200 IQCRNKT*IVNKIQLKTQNWHNRIKIKHNSLF 295
           +QC NKT +V K+QL +   H  +K  ++SLF
Sbjct: 64  VQCDNKTGVVTKLQLPSGCLHGSMK-PNSSLF 94


>At5g02620.1 68418.m00198 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 524

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 440 GELGTGPPLE*LIFIVYTCFALFPMISIWLHNTMVRV 330
           GE    P  E LIF+V+  FALF  +++ +  T V V
Sbjct: 389 GEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVV 425


>At3g11290.1 68416.m01373 expressed protein
          Length = 460

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +3

Query: 363 YHRK*SKTSIHNKY*LLEGGPGTQFAL**VVLQFTGRRFTTS*LGKPWRTQLNR 524
           YHR      +  K  +L   PGTQ  L    LQ TG RFT + L   W T + +
Sbjct: 11  YHRVFVDLCVEQK--MLGNQPGTQHILK-PFLQRTGARFTRNQLKNHWDTMIKQ 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,207,085
Number of Sequences: 28952
Number of extensions: 255219
Number of successful extensions: 517
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)