Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1107
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    29   0.87 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.6  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    27   2.6  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   2.6  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    27   3.5  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   8.1  

>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +2

Query: 539 PDLLSVQRSTALVRASVSNELTYQSERSWKLFQGLPLR 652
           PDL+ VQ STA    SV  ELT     + KL    P R
Sbjct: 517 PDLVCVQTSTAETFLSVDRELTTYDLNTIKLLNTAPSR 554


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 254  CQLLVVYMKVCYFIFLNFENHTILYII*FHNNANPSTTYIVCL 126
            CQLL++++ VC   F+N     + Y I  HN+   S + I  L
Sbjct: 3842 CQLLMLFLPVCE-QFINLAESVLDYFINVHNSNLDSLSKISTL 3883


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 158 ANPSTTYIVCLCKKKNTNIRVPFDV*--YCLLHDENVLQLFSLK 33
           ++PSTT+    C     +I+  F+V   YC+LH +N L+ F  K
Sbjct: 432 SHPSTTF----CSNVENDIKEIFEVCKDYCMLHVQNNLKAFEEK 471


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 485 NIFCILTNDP*HNPLNFSPDLLSVQRSTALVRASVSNELTYQSERSWKLFQGLP 646
           NI  +L++    +P NF P +L +     LV     N    ++ +SW+LF+  P
Sbjct: 185 NIAAVLSHKVAASPANFPPLVLQL-----LVVPVCDNTANAKTHKSWELFENTP 233


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -1

Query: 521 CVMGRWSICKKYLEFICMFSSVRRIYFGNQMAYHIILKVKVIISDFYLGFGHI 363
           C+  RW I K+Y EF C  SS++ I         ++ +VK   ++  +G  H+
Sbjct: 36  CICLRWCISKEYHEFTC--SSLQFIVIRPAGTSVLLGRVKSSKANQLVGIEHV 86


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 616 LGLVGELIANTGSNKSSASLNRE 548
           LGL  ELI N+ SN S AS+  E
Sbjct: 368 LGLTPELIFNSLSNSSIASIQEE 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,815
Number of Sequences: 5004
Number of extensions: 62434
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)