Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1107
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3805| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.003
SB_25320| Best HMM Match : 7tm_1 (HMM E-Value=3.29305e-43)             31   1.2  
SB_29528| Best HMM Match : Sterol_desat (HMM E-Value=6.4e-16)          29   2.8  
SB_56668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_17934| Best HMM Match : PX (HMM E-Value=2e-19)                      28   8.6  

>SB_3805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = -3

Query: 384 LSRFWTHHYKVQFAHLSAYLPYRFSLNNSFTIFSIKINLFTFILSITGGVYEGVLFYFFE 205
           L   WT HY+ +   + AY  Y F++  SF   + KI  +  I+S     Y+G  +  ++
Sbjct: 19  LDPHWTRHYRARLLGVIAYTQYAFTIVTSFPRRTQKIICYKAIISSAAAKYKGFAWLTYD 78

Query: 204 FRKSHY 187
               HY
Sbjct: 79  QNFCHY 84


>SB_25320| Best HMM Match : 7tm_1 (HMM E-Value=3.29305e-43)
          Length = 391

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 269 YLHLFCQLLVVYMKVCYFIFLNFENHTILYII*FHNNAN 153
           +L L C L+ ++  V Y  +LN   + I+Y I  HN  N
Sbjct: 280 HLRLPCGLMALHFSVFYIAWLNSATNPIIYFIYSHNYRN 318


>SB_29528| Best HMM Match : Sterol_desat (HMM E-Value=6.4e-16)
          Length = 368

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -3

Query: 372 WTHHYKVQFAHLSAYLPYRFSLNNSFTIFSIKINLFTFILSITGGVYEGVLFYFFEF-RK 196
           W H YK   A  SA   +       F +F   I +  F++ I  GV+ G+L Y + +  K
Sbjct: 197 WHHRYKAPTA-FSATAMHPVE----FLVFQFFIVIPAFVVPINAGVFVGILLYLYYYGMK 251

Query: 195 SH 190
            H
Sbjct: 252 DH 253


>SB_56668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 97  FRLMCDIVYCTMKMFYSFFLSNIKYI 20
           FR++  +V+ T++MF+ F   NI+Y+
Sbjct: 36  FRVVKGVVWTTIEMFWVFISRNIRYL 61


>SB_17934| Best HMM Match : PX (HMM E-Value=2e-19)
          Length = 586

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 572 EQCFAEQREDPARNLVGCVMGRWSI--CKKYLEFICM 468
           E CF E R++  +  + C++ R  I   +  +EF+C+
Sbjct: 95  ENCFIEMRKNALQEYLNCILSRDDISGSQPVVEFLCL 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,578,676
Number of Sequences: 59808
Number of extensions: 419574
Number of successful extensions: 860
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)