Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1107
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99284-2|CAL49452.1| 546|Caenorhabditis elegans Hypothetical pr... 32 0.47
Z92796-7|CAB63230.2| 546|Caenorhabditis elegans Hypothetical pr... 32 0.47
Z81130-8|CAB03416.1| 347|Caenorhabditis elegans Hypothetical pr... 31 0.61
AY455927-3|AAR26304.1| 347|Caenorhabditis elegans phosphoglucos... 31 0.61
AL110479-14|CAB60319.1| 417|Caenorhabditis elegans Hypothetical... 30 1.4
AF024492-8|AAF98620.1| 336|Caenorhabditis elegans Serpentine re... 29 4.3
Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical pr... 28 7.6
AF022971-2|AAG23980.1| 327|Caenorhabditis elegans Seven tm rece... 28 7.6
AC006607-4|AAK68171.1| 309|Caenorhabditis elegans Serpentine re... 28 7.6
>Z99284-2|CAL49452.1| 546|Caenorhabditis elegans Hypothetical
protein H25K10.1 protein.
Length = 546
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 336 SAYLPYRFSLNN--SFTIFSIKINLFTFILSITGGVYEGVLFYFFEFRKSHYIIYN 175
+AY+PY N S +IF+ I+ FT + GVY LF+ F+F +H+I N
Sbjct: 180 AAYVPYMVFAGNHESNSIFNHIIHRFTMPKN---GVYNDNLFWSFDFGNAHFIGLN 232
>Z92796-7|CAB63230.2| 546|Caenorhabditis elegans Hypothetical
protein H25K10.1 protein.
Length = 546
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 336 SAYLPYRFSLNN--SFTIFSIKINLFTFILSITGGVYEGVLFYFFEFRKSHYIIYN 175
+AY+PY N S +IF+ I+ FT + GVY LF+ F+F +H+I N
Sbjct: 180 AAYVPYMVFAGNHESNSIFNHIIHRFTMPKN---GVYNDNLFWSFDFGNAHFIGLN 232
>Z81130-8|CAB03416.1| 347|Caenorhabditis elegans Hypothetical
protein T23G11.2 protein.
Length = 347
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -3
Query: 552 ERRSGEKFSGLCHGSLVNMQKIFGIYLYVLKCTSDLLW*PNGLSHNTQGKGNNFRFLSR 376
E+ G+K L + LV M K G+Y L+C ++L+ P +N G N FL +
Sbjct: 107 EKMRGKKLGALLNEVLVEMAKTIGVYKLSLECKTELI--P---FYNKFGYSKNLHFLDQ 160
>AY455927-3|AAR26304.1| 347|Caenorhabditis elegans
phosphoglucosamine acetyltransferaseprotein.
Length = 347
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -3
Query: 552 ERRSGEKFSGLCHGSLVNMQKIFGIYLYVLKCTSDLLW*PNGLSHNTQGKGNNFRFLSR 376
E+ G+K L + LV M K G+Y L+C ++L+ P +N G N FL +
Sbjct: 107 EKMRGKKLGALLNEVLVEMAKTIGVYKLSLECKTELI--P---FYNKFGYSKNLHFLDQ 160
>AL110479-14|CAB60319.1| 417|Caenorhabditis elegans Hypothetical
protein Y105C5B.15 protein.
Length = 417
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 336 SAYLPYRFSLNN--SFTIFSIKINLFTFILSITGGVYEGVLFYFFEFRKSHYIIYN 175
+AY+PY N S + F+ IN FT + GVY+ LF+ F++ +H+I N
Sbjct: 185 AAYVPYMVFAGNHESDSHFNQIINRFTMPKN---GVYDNNLFWSFDYGLTHFIGLN 237
>AF024492-8|AAF98620.1| 336|Caenorhabditis elegans Serpentine
receptor, class h protein130 protein.
Length = 336
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 327 LPYRFSLNNSFTIFSIKINLFTFILSITGGVYEG-VLFYF 211
LP + F +++I+I L TFI+ V G V+FYF
Sbjct: 176 LPQEIFDHPDFYVYAIEITLLTFIIGSAAFVITGEVIFYF 215
>Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical
protein T21E8.2 protein.
Length = 1263
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 506 WSICKKYLEFICMFSSVRRIYFGNQMAYHIILKVKVIISDF-YLGFGHITIKSSSPICPH 330
+SI + + F C + +Y G M Y L+ V++ F Y+ FG + S PH
Sbjct: 283 YSISRGFTYFFCNSLNTVILYVGANMIYSGSLEPAVVVRIFHYMMFGAFCL---SEALPH 339
Query: 329 IYRI 318
I R+
Sbjct: 340 ISRL 343
>AF022971-2|AAG23980.1| 327|Caenorhabditis elegans Seven tm
receptor protein 46 protein.
Length = 327
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 324 PYRFSLNNSFTIFSIKINLFTFILSITGGVYEGVLFYFF 208
P+ + N +F FS+ F++ I+ VY G FY F
Sbjct: 64 PFAHNYNRAFVFFSLNTQNSLFLVQISVAVYAG--FYLF 100
>AC006607-4|AAK68171.1| 309|Caenorhabditis elegans Serpentine
receptor, class xa protein5 protein.
Length = 309
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 272 IYLHLFCQLLVVYMKVCYFIFLNFENHTILYII*FHNNANPSTTY 138
I + +F L++ YM C LNF++ T +++ N +P TT+
Sbjct: 136 ITICVFISLIIPYMSYCP---LNFDSRTNIFVAACDPNRHPITTF 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,932,538
Number of Sequences: 27780
Number of extensions: 339476
Number of successful extensions: 881
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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