Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1107
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SD...    29   3.0  
At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SD...    29   3.0  
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains...    28   7.0  
At3g09170.1 68416.m01088 Ulp1 protease family protein contains P...    27   9.3  
At1g34610.1 68414.m04301 Ulp1 protease family protein contains P...    27   9.3  

>At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SDR)
           family protein contains oxidoreductase, short chain
           dehydrogenase/reductase family domain, Pfam:PF00106
          Length = 349

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +2

Query: 272 FIFIENIVNELFSENLYGK 328
           F F+++I + +FSENLYGK
Sbjct: 30  FKFLQSIFSTIFSENLYGK 48


>At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SDR)
           family protein similar to sterol-binding dehydrogenase
           steroleosin GI:15824408 from [Sesamum indicum]
          Length = 349

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +2

Query: 272 FIFIENIVNELFSENLYGK 328
           F F+++I + +FSENLYGK
Sbjct: 30  FKFLQSIFSTIFSENLYGK 48


>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 576

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 230 SYTPPVIDKINVNKFIFIENIVNELFSENLYGKYADKWANWTL 358
           SY P ++ +  + K       +  L  EN+YG Y+D W + TL
Sbjct: 216 SYLPFMVKRATLMKQEKKTLKIFTLSPENMYGNYSDAWTSVTL 258


>At3g09170.1 68416.m01088 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 1000

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 423 SHNTQGKGNNFRFLSRFWTHHYKVQFAH 340
           +H  Q +G+ F FL +  TH + V F H
Sbjct: 42  NHLKQLEGSQFGFLLQMGTHQFSVMFLH 69


>At1g34610.1 68414.m04301 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 997

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 423 SHNTQGKGNNFRFLSRFWTHHYKVQFAH 340
           +H  Q +G+ F FL +  TH + V F H
Sbjct: 42  NHLKQLEGSQFGFLLQMGTHQFSVMFLH 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,547,712
Number of Sequences: 28952
Number of extensions: 296773
Number of successful extensions: 694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)