Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1106
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   3.9  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.2  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   9.0  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 325 VFWGYIVLFGLWYSGYLVVTNW 260
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 410 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKKKNLVLL 529
           AEA + D   + P       K  V  +VAE  +K++L ++
Sbjct: 76  AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVI 115


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 129 AMPVAEEKDVVPAQPILEVAPKIDDSVKP 215
           A+PV  E   VP  P+  VAP++    +P
Sbjct: 564 AVPVVPEALSVPQPPVAPVAPEVPSVPQP 592


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,992
Number of Sequences: 5004
Number of extensions: 35296
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)