Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1106
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0513 + 3828196-3828309,3828408-3828722,3828823-3828879,382... 29 2.3
05_07_0174 + 28156399-28156525,28157094-28157155,28157428-28158615 29 3.0
02_01_0201 - 1347868-1347925,1348040-1348135,1348447-1348523,134... 29 3.0
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 29 3.0
08_02_1167 + 24847689-24848156 28 5.3
06_03_1500 + 30602846-30603185,30603244-30603323,30603477-306035... 28 5.3
01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384 28 7.0
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 27 9.3
08_02_1331 + 26195949-26196132,26196606-26196710,26197270-261981... 27 9.3
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 27 9.3
>07_01_0513 +
3828196-3828309,3828408-3828722,3828823-3828879,
3829668-3829826,3829918-3830028,3830173-3830259,
3830359-3830591,3830808-3830886,3831173-3831316,
3831529-3831568,3831667-3831729,3832193-3832224,
3832320-3832361,3832444-3832557
Length = 529
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +2
Query: 413 EAKSADIKVEEPAAQPEDSKTE--VQATVAEISKK 511
E++S DIK + +AQP +K E VQAT++ + KK
Sbjct: 394 ESQSEDIKPADSSAQPISAKKEPLVQATLSSMFKK 428
>05_07_0174 + 28156399-28156525,28157094-28157155,28157428-28158615
Length = 458
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 404 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKKKNLVLLMQKVLPTQLP 559
P+AE K ++ P AQP+ ++A V S + +L L LP QLP
Sbjct: 44 PNAEPKRPSSQI--PTAQPDPMVDRLRALVVNRSWRTSLQALPPPPLPPQLP 93
>02_01_0201 -
1347868-1347925,1348040-1348135,1348447-1348523,
1349385-1349453,1349576-1349629,1350295-1350350,
1350487-1350694,1350978-1351066,1351163-1351187
Length = 243
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 486 ACTSVFESSG*AAGSSTLISADFASASGISDDF 388
+CT +F+SS +A + ++A FA AS D+F
Sbjct: 64 SCTYIFDSSDASASGAADVAATFAKASRKMDEF 96
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 395 SEIPDAEAKSADIKVEEP---AAQPEDSKTEVQATVAEISKKK 514
+E P AEA S + K EEP AA E +K E +A A + K
Sbjct: 167 TEEPKAEASSEEAKTEEPKAEAAADEPAKEESKAEAAPAEEAK 209
>08_02_1167 + 24847689-24848156
Length = 155
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 386 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQA 487
AK E P+AEA++A VEE AA P + E +A
Sbjct: 108 AKEPE-PEAEAEAAAAPVEEAAAAPVEVAEEAEA 140
>06_03_1500 +
30602846-30603185,30603244-30603323,30603477-30603566,
30603677-30603909,30604126-30604204,30604320-30604464,
30604815-30604877,30605343-30605374,30605475-30605516,
30605599-30605712
Length = 405
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +2
Query: 413 EAKSADIKVEEPAAQPEDSKTE--VQATVAEISKK 511
E++S DIK + +AQP +K E VQAT++ + KK
Sbjct: 283 ESQSEDIKPADWSAQPISAKKEPLVQATLSSMFKK 317
>01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384
Length = 335
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 51 KRRRVTGSIFKMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSVK 212
KR G + ++ LLLC+A AA + A+P A P P+ E+ + +V+
Sbjct: 96 KRIGSAGDLGWIEYLLLCLAPAAAAAALPCAATSPTPPC-PLRELLREYSAAVR 148
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 57 RRVTGSIF--KMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSVK 212
RRV+G +F LL+C AA A PVA + P+ +D +K
Sbjct: 219 RRVSGIVFLTSFAALLVCSVVAAAIAAPPVAAALAAAASMPVGSAGKWMDSLLK 272
>08_02_1331 +
26195949-26196132,26196606-26196710,26197270-26198127,
26198669-26199458,26200240-26200329,26200636-26200712,
26200797-26201383
Length = 896
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +2
Query: 245 ESRTAPVSNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKS 424
++R V V A+P+ D + D A + SE A
Sbjct: 116 QTRKDKVQGKVVDALPQKVLCDAKVDGMDAATADSRIPEDRASPSFVSPLSEENALIASG 175
Query: 425 ADIKVEEPAAQPE-DSKTEVQATVAEISKK 511
+D+K+ + A QPE ++ ++ A+ A+++ K
Sbjct: 176 SDVKINDSAVQPEVSTEAKMTASSAKVTTK 205
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Frame = +2
Query: 281 PAIPEAKK--------DDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIK 436
P IPE+K+ + +P++ DI +S +P++ + + DIK
Sbjct: 1272 PQIPESKELSQQSKILPESSPDNHDIKCEYSSPTPIPESKELSLQSKILPESSSDNQDIK 1331
Query: 437 VEEPAAQPEDSKTEV 481
E+P+ P EV
Sbjct: 1332 CEDPSPTPISKSKEV 1346
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,574,384
Number of Sequences: 37544
Number of extensions: 224827
Number of successful extensions: 641
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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