Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1106
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)                 34   0.083
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_30781| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_26428| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
          Length = 242

 Score = 34.3 bits (75), Expect = 0.083
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +2

Query: 398 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEI 502
           E P  EA+S D KVE P  + E  + EV+ATV E+
Sbjct: 22  ETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEV 56


>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 419 KSADIKVEEPAAQPEDSKTEVQATVAEISK---KKNLVLLMQKVLPTQLPSFPTW 574
           ++ DI VE PA+    +KTE +   AE+ K    +    L+ +VL +  P+ PT+
Sbjct: 781 RNEDIVVEVPASNEPAAKTEDEIRKAEMCKFEQAQEAEDLISEVLKSYAPTLPTY 835


>SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1643

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 416 AKSADIKVEEPAAQPEDSKTEVQATVAEISKKKNLVLLMQK 538
           A  AD+  EEPA++   ++TE+     E +K K+L ++ Q+
Sbjct: 340 AYMADVDDEEPASESLATRTEISELYTESAKLKSLGVIHQE 380


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 392 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAE 499
           ++E+P  +A ++  + E PAA+PE +  E +A V +
Sbjct: 587 TAEVPIEDADTSTEEAESPAAEPEVAVKEAEAPVED 622


>SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 434  KVEEPAAQPEDSKTEVQATVAEISKKKNLVLLMQK 538
            KVEE   Q +  K +++ T   + K+ + +LLMQK
Sbjct: 1075 KVEEDIKQAKKKKQKLETTATALLKEADDLLLMQK 1109


>SB_30781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 491 VAEISKKKNLVLLMQKVLPTQLPSFPT 571
           VA I+    L++L+Q+V PT L SFP+
Sbjct: 4   VARIAVFLCLIVLLQEVRPTHLASFPS 30


>SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 203 LG*TYRSSCCH*REESRTAPVSNDEVPAIPEAKKDDIAPEDSD 331
           LG T+ S  C  +EE+   P S DE   + E+ ++D  P +SD
Sbjct: 186 LGVTFIS--CFGKEETVEEPPSIDEPTPVAESPQEDELPNESD 226


>SB_26428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 428 DIKVE-EPAAQPEDSKTEVQATVAEISKKKNLVL 526
           D KVE +PA  P +   EVQ  +A+++K    ++
Sbjct: 122 DYKVEVDPAKPPREGVPEVQVVIADLTKNTEYIV 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,510,168
Number of Sequences: 59808
Number of extensions: 264312
Number of successful extensions: 1104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)