Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1106
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin p...    28   4.8  
AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin p...    28   4.8  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    28   6.3  

>Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 242 EESRTAPVSNDEVPAIPEAKKDDIAPEDSDI 334
           E++   P   +E+P +PE  ++   P DS+I
Sbjct: 532 EDTTPGPAVTEEIPEVPEPTEEPPTPTDSEI 562


>Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 242 EESRTAPVSNDEVPAIPEAKKDDIAPEDSDI 334
           E++   P   +E+P +PE  ++   P DS+I
Sbjct: 532 EDTTPGPAVTEEIPEVPEPTEEPPTPTDSEI 562


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
 Frame = +3

Query: 522  CY*CRRFCRLSCHHSQHGEEDR-LGSYCRKRC--CCNS 626
            C  C+ FC   C H   G  +R  G  C K C  C N+
Sbjct: 1808 CPPCKAFCTNKCEHQSCGAGERGFGRDCSKLCALCVNN 1845


>U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical
           protein PAR2.4b protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 120 VSLAMPVAEEKDVVPAQPIL 179
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical
           protein PAR2.4a protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 120 VSLAMPVAEEKDVVPAQPIL 179
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin
           polymerizing factor-S protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 120 VSLAMPVAEEKDVVPAQPIL 179
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin
           polymerizing factor protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 120 VSLAMPVAEEKDVVPAQPIL 179
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
           protein C09E7.7 protein.
          Length = 995

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 405 PMLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQ 506
           P L  N+LI  WK +    K ++ KY +  LK Q
Sbjct: 199 PKLSLNVLISMWKKEFSDWKDEEFKYFIDFLKSQ 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,620,691
Number of Sequences: 27780
Number of extensions: 199353
Number of successful extensions: 781
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)