Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1106
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49990.1 68416.m05466 expressed protein                             32   0.27 
At5g26200.1 68418.m03118 mitochondrial substrate carrier family ...    32   0.36 
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate...    29   1.9  
At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    29   3.4  
At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein ...    27   7.8  
At2g25570.1 68415.m03062 expressed protein                             27   7.8  

>At3g49990.1 68416.m05466 expressed protein
          Length = 502

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 401 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKKKNLV 523
           +P   A+  D+K E P A+P   KT  Q +  E  ++KN V
Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEEKKERKNAV 462


>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 342

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = -1

Query: 211 LTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 107
           +T+SS+  AT R+G + TTS + A G A LT+A A
Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146


>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
           contains weak similarity to vacuolar calcium binding
           protein [Raphanus sativus] gi|9049359|dbj|BAA99394
          Length = 152

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +2

Query: 242 EESRTAPVSNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAK 421
           EE+  A V   E P + E KKD+ AP ++ +                  K  E+ + + +
Sbjct: 65  EETEEAQV---ETPEVVEIKKDEEAPVETPVV---VEDESKTEEVVEAKKEEEVEEKKTE 118

Query: 422 SADIKV-EEPAAQPEDSKTEVQATV 493
            A + V EE   + E+ K  V+A+V
Sbjct: 119 EAPVVVEEEKKPEAEEEKPAVEASV 143


>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 272 DEVPAIPEAKKDDIAPE 322
           D+  +IPEAK+DD APE
Sbjct: 197 DDTASIPEAKEDDAAPE 213


>At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 586

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 374 FLRFSLQERFPVSRYRSLLGLYRPFWPLV 288
           FL F   E  PV  ++ L  L RP WPL+
Sbjct: 25  FLSFPRPENTPVQLFQLLHTLERPGWPLL 53


>At2g25570.1 68415.m03062 expressed protein
          Length = 288

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 546 RLSCHHSQHGEEDRLGSYCR 605
           +++CHH+ HG E R G + R
Sbjct: 18  KIACHHTVHGFEQRRGLHSR 37


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,974,557
Number of Sequences: 28952
Number of extensions: 183889
Number of successful extensions: 533
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)