Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1105
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325...    31   0.64 
01_06_1183 - 35176780-35177266,35179631-35181093                       29   4.5  
02_05_0940 - 32934214-32934906,32936049-32936185,32936281-329364...    28   7.8  

>10_08_0877 +
           21230447-21230815,21231855-21232208,21232417-21232504,
           21232844-21233268,21233477-21233632,21233849-21234016,
           21234170-21234310,21234393-21234629,21234710-21234823,
           21235096-21235272
          Length = 742

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 264 SVEASAGDGKIQRFQLITPDRTFEFGTQDHKSRLQWISSLRQA 392
           S   S  D K  RF +ITP +T +  T   K R+ WI +L  A
Sbjct: 126 SFSESKSDDK--RFYIITPTKTLQLRTGSAKDRVAWIEALVSA 166


>01_06_1183 - 35176780-35177266,35179631-35181093
          Length = 649

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 322 IGLLSSALRIIKVASNGYRRCVKRPQSRVVLKA 420
           +GL    L ++ +AS   RRC   P+S   LKA
Sbjct: 144 LGLADDVLDVLALASRQCRRCSPAPESEEALKA 176


>02_05_0940 -
           32934214-32934906,32936049-32936185,32936281-32936416,
           32936503-32936886
          Length = 449

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 171 ILVRAAALRPHILQELVAEGAMRQDRHREYCSVEAS 278
           +   A A R ++   + AEGAMR+  HR   SV  S
Sbjct: 405 VAAAAKAKRRYVASAVHAEGAMRKGEHRYASSVSGS 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,742,036
Number of Sequences: 37544
Number of extensions: 281148
Number of successful extensions: 809
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)