Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1105
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15540| Best HMM Match : DUF29 (HMM E-Value=1.3)                     34   0.12 
SB_40486| Best HMM Match : C2 (HMM E-Value=2.9e-05)                    31   0.64 
SB_13597| Best HMM Match : PH (HMM E-Value=1.1)                        31   1.1  
SB_58950| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)                      30   2.0  
SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_37094| Best HMM Match : PH (HMM E-Value=0.0005)                     28   7.9  

>SB_15540| Best HMM Match : DUF29 (HMM E-Value=1.3)
          Length = 150

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +1

Query: 76  EAVDEIYDVFIEDIIXXXXXXXXXXXXPTMREYWCVLQPCALTYYKSSSQKEQCGRIVI 252
           E +DE+ D  I ++I             +M++ W VL+   L+Y+ + S  E+ G I++
Sbjct: 87  EGLDEMRDYVIHEVIKQGYLIKKGHMVKSMKDRWFVLKAGHLSYFTNRSCSEKKGEIIV 145


>SB_40486| Best HMM Match : C2 (HMM E-Value=2.9e-05)
          Length = 698

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 290 PVSCRCFHRTVLSMTILPHCSFC 222
           P+ CR  HRT +S T++ HC  C
Sbjct: 266 PLLCRISHRTKVSTTVMRHCQKC 288


>SB_13597| Best HMM Match : PH (HMM E-Value=1.1)
          Length = 160

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 303 FQLITPDRTFEFGTQDHKSRLQWISSL 383
           F +ITP R FE    D + +++WI++L
Sbjct: 118 FDVITPARVFELMAHDEEEKVRWINAL 144


>SB_58950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -3

Query: 344 SAELKSPIRCDELEALYLPVSC---RCFH 267
           S    SP RC ++ +LY+P +C   RC+H
Sbjct: 389 SRAFTSPQRCQDISSLYIPHACRLLRCYH 417


>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
          Length = 409

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +1

Query: 55  LHNLALIEAVDEIYDVFIEDIIXXXXXXXXXXXXPTMREYWCVLQPCALTYYKSSSQKEQ 234
           L NLA    V ++ +VF++  +               + Y CVL+  A+ Y+K +  ++Q
Sbjct: 43  LENLAKPLKVSDVPNVFLQGYLCKHRKKGIYIGSKWQKRY-CVLRDYAMYYFKDNHAEKQ 101

Query: 235 CGRIVI 252
            G I++
Sbjct: 102 KGTIIL 107


>SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 635 NWDRAPPRVRFVRFSVLLASCCP 567
           +W RAPPR R  R S++  SC P
Sbjct: 18  SWYRAPPRGRRYRVSLISNSCSP 40


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 282 GDGKIQRFQLITPDRTFEFGTQDHKSRLQWIS 377
           G+GK   F +++ +RTF F   D      W+S
Sbjct: 31  GEGKKHNFSIVSHNRTFLFQADDEADLDAWVS 62


>SB_37094| Best HMM Match : PH (HMM E-Value=0.0005)
          Length = 1007

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 303 FQLITPDRTFEFGTQDHKSRLQWISSLRQATAV 401
           FQ++T +RT+       +    W+S LRQA  +
Sbjct: 75  FQIVTGNRTYHLSAPTPELVTDWVSVLRQAMQI 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,546,387
Number of Sequences: 59808
Number of extensions: 307375
Number of successful extensions: 2621
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2620
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)