Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1105
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43175.1 68418.m05270 basic helix-loop-helix (bHLH) family pr...    31   0.93 
At2g40620.1 68415.m05010 bZIP transcription factor family protei...    28   5.0  
At4g28520.3 68417.m04081 12S seed storage protein, putative / cr...    28   6.6  
At4g28520.1 68417.m04080 12S seed storage protein, putative / cr...    28   6.6  

>At5g43175.1 68418.m05270 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 223

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 244 IVIESTVRWKHRQETGRYSASNSSHLIGLLSSALRIIKVASNGYRRCVKRPQS 402
           +V E    W+  Q    Y++S+    +GL+S+  + +K  +   R     PQS
Sbjct: 92  LVTEPKTAWRDGQSLSSYNSSDDEKALGLVSNTSKSLKRKAKANRGIASDPQS 144


>At2g40620.1 68415.m05010 bZIP transcription factor family protein
           identical to b-Zip DNA binding protein GI:2246376 from
           [Arabidopsis thaliana]; contains a bZIP transcription
           factor basic domain signature (PDOC00036)
          Length = 367

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +3

Query: 222 AEGAMRQDRHREYCSVEASAGDGKIQRFQLITPDRTFEFGTQDHKSRLQWISSLRQATAV 401
           AE    + RHR   SV+ S+    I+  + + PD+  E    D K R + I + RQ+ A 
Sbjct: 106 AEAGNSRPRHRHSLSVDGSSTLESIEAKKAMAPDKLAELWVVDPK-RAKRIIANRQSAAR 164

Query: 402 S 404
           S
Sbjct: 165 S 165


>At4g28520.3 68417.m04081 12S seed storage protein, putative /
           cruciferin, putative strong similarity to SP|P33525
           Cruciferin CRU1 precursor (11S globulin) (12S storage
           protein) from Brassica napus; contains Pfam profile
           PF00190 Cupin and Prosite 11-S plant seed storage
           proteins signature PS00305 isoform contains
           non-consensus AC acceptor splice site at intron 3
          Length = 453

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 285 DGKIQRFQLITPDRTFEFGTQDHKSRLQWIS 377
           D ++Q+ QL+   + F +  Q H ++ +WIS
Sbjct: 355 DQQVQKGQLVVIPQGFAYVVQSHGNKFEWIS 385


>At4g28520.1 68417.m04080 12S seed storage protein, putative /
           cruciferin, putative strong similarity to SP|P33525
           Cruciferin CRU1 precursor (11S globulin) (12S storage
           protein) from Brassica napus; contains Pfam profile
           PF00190 Cupin and Prosite 11-S plant seed storage
           proteins signature PS00305 isoform contains
           non-consensus AC acceptor splice site at intron 3
          Length = 524

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 285 DGKIQRFQLITPDRTFEFGTQDHKSRLQWIS 377
           D ++Q+ QL+   + F +  Q H ++ +WIS
Sbjct: 426 DQQVQKGQLVVIPQGFAYVVQSHGNKFEWIS 456


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,004,453
Number of Sequences: 28952
Number of extensions: 204451
Number of successful extensions: 569
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)