Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1104
         (476 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6AQP5 Cluster: Putative uncharacterized protein; n=1; ...    35   0.81 
UniRef50_Q4WNT9 Cluster: Methionine aminopeptidase, type II, put...    33   4.3  
UniRef50_Q74C22 Cluster: Membrane protein, putative; n=1; Geobac...    32   7.5  

>UniRef50_Q6AQP5 Cluster: Putative uncharacterized protein; n=1;
           Desulfotalea psychrophila|Rep: Putative uncharacterized
           protein - Desulfotalea psychrophila
          Length = 255

 Score = 35.1 bits (77), Expect = 0.81
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 164 QNSHYLLCKLPARVTTDATK*NKNINF--LCFNCEDCYFKIRR 286
           Q SH+ L K+  +  TDA    KNI+   +C +C D YF  RR
Sbjct: 193 QESHFNLWKISEKQLTDAGLQRKNISLAEICTSCHDNYFSYRR 235


>UniRef50_Q4WNT9 Cluster: Methionine aminopeptidase, type II,
           putative; n=1; Aspergillus fumigatus|Rep: Methionine
           aminopeptidase, type II, putative - Aspergillus
           fumigatus (Sartorya fumigata)
          Length = 494

 Score = 32.7 bits (71), Expect = 4.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 424 TGHSNLLHGRNRQGGDTYPCGLTRGH 347
           TGH  L  G N +GG  +PCGL+  H
Sbjct: 196 TGHQGLEEGDNLKGGMGFPCGLSINH 221


>UniRef50_Q74C22 Cluster: Membrane protein, putative; n=1; Geobacter
           sulfurreducens|Rep: Membrane protein, putative -
           Geobacter sulfurreducens
          Length = 407

 Score = 31.9 bits (69), Expect = 7.5
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 123 ITFIISLHIYFVDVRTLTTCCVNYLRGLLPTRRNKIKI*TFFALIVKTVTSKS-GDRIDV 299
           +TF I++ + F  +  L TCC + +RG   T  N  K+   F L +  +T  +  DR+ +
Sbjct: 173 VTFAITISMIFCGLIALVTCCRSKIRGCDDTNNNS-KLLVGFILSIAIITYLNYFDRLII 231

Query: 300 KN 305
            N
Sbjct: 232 NN 233


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 465,018,402
Number of Sequences: 1657284
Number of extensions: 9027067
Number of successful extensions: 18880
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18866
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26870548160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)