Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1104
         (476 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    25   0.27 
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    23   1.1  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    23   1.1  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    23   1.9  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   5.8  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   5.8  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 316 INGRFFTSIRSPDFEVTVFTIKAKKVYIFILFRRV 212
           I G+ F  +RSP F +TV      K+  F +FR +
Sbjct: 629 ITGKMFQGVRSPTFHLTVRNTSIIKI-PFDVFRNM 662


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
 Frame = +2

Query: 257 CEDCYFKIRRP---N*CEKS 307
           CEDCY   R P   N C K+
Sbjct: 69  CEDCYMLFREPQLHNLCRKN 88


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
 Frame = +2

Query: 257 CEDCYFKIRRP---N*CEKS 307
           CEDCY   R P   N C K+
Sbjct: 69  CEDCYMLFREPQLHNLCRKN 88


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 257 CEDCYFKIRRP 289
           CEDCY   R P
Sbjct: 69  CEDCYMLFREP 79


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 148 ICNEIINVMT*LLACLWRVIATRYTM*TNFIS 53
           ICN +I+     +  L   I  R+T+  N+++
Sbjct: 160 ICNTVISATVCFMMLLMLEIWRRFTILNNYLT 191


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 148 ICNEIINVMT*LLACLWRVIATRYTM*TNFIS 53
           ICN +I+     +  L   I  R+T+  N+++
Sbjct: 156 ICNTVISATVCFMMLLMLEIWRRFTILNNYLT 187


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,412
Number of Sequences: 336
Number of extensions: 2515
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)