Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1104
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   3.4  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   5.9  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   5.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 464 PPPVGQPPLSNGKNRPFQLA 405
           PPP+ Q P++N  +RP   A
Sbjct: 203 PPPLSQAPVANTSSRPSSFA 222


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 442 PFQTEKTGHSNLLHGRNRQGGD 377
           PF    +G+ +L++G ++QG D
Sbjct: 577 PFDEISSGYDDLMNGNDKQGND 598


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 454 WANPPFQTEKTGHSNL 407
           WANPP Q   T H++L
Sbjct: 766 WANPPVQKLSTPHNHL 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,468
Number of Sequences: 5004
Number of extensions: 37640
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)