Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1104
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57...    29   1.9  
04_01_0094 - 989187-989243,989288-989458                               29   1.9  
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396...    28   4.5  
07_03_1171 - 24514096-24514228,24514399-24514446,24514495-245148...    27   7.8  
06_03_0843 + 25315089-25315417,25317274-25317310,25317439-253176...    27   7.8  

>08_01_0081 -
           574119-575204,575794-576191,576321-576382,576581-576653,
           576754-576824,576961-577148,577230-577377,577465-577503,
           577601-577656,577745-577798,577900-578003,578117-578217,
           578726-578796,578912-578968,579306-579422,579653-579682
          Length = 884

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 370 GRYHRPACFCREASWNGRFFPFERGGWPT 456
           GRYHR      +  WNG +F ++  G  T
Sbjct: 652 GRYHRARRVYTDELWNGGYFNYDNSGGAT 680


>04_01_0094 - 989187-989243,989288-989458
          Length = 75

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -3

Query: 390 GRAVIPTRADSQEVIYRSVIDNNQTLMGDFSHQFGLRILK*QSSQLKQRKFIFL 229
           GRA I TRA  + V    V+   + L G+     G R+L   S QL+Q   +FL
Sbjct: 11  GRAEIDTRAPFRSVKEAVVLFGEKVLAGELHAGAGRRLLA-TSDQLQQMMTVFL 63


>01_06_1507 -
           37838645-37839311,37839393-37839499,37839588-37839663,
           37839747-37839869,37840051-37840208,37840311-37840385,
           37840466-37840506,37840594-37840670,37840755-37840883,
           37840990-37841060,37841237-37841332,37841489-37841584,
           37841681-37841953,37842871-37842957,37843101-37843178,
           37843350-37843514,37843622-37843768,37843921-37843983,
           37844082-37844201,37844352-37844543,37844672-37844748,
           37845094-37845196,37845684-37845887
          Length = 1074

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 470 LWPPPVGQPPLSNGKNRPFQLASRQKQAG 384
           LW    G+ P  N   RP++ ++RQ  AG
Sbjct: 830 LWHEDSGRRPHDNNNRRPYENSNRQNPAG 858


>07_03_1171 -
           24514096-24514228,24514399-24514446,24514495-24514886,
           24515637-24515849,24516245-24516414,24516515-24516629
          Length = 356

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 337 CHRQQPNINGRFFTSIRSPDFE--VTVFTIKAKKVYI 233
           C  QQP+I GRF  ++  P+ +  V  F +K  ++ I
Sbjct: 257 CMEQQPSIAGRFLCAVGYPNMQDYVDRFAVKYPEIAI 293


>06_03_0843 +
           25315089-25315417,25317274-25317310,25317439-25317675,
           25317745-25317792,25318144-25318577,25318675-25318759
          Length = 389

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 464 PPPVGQPPLSNGKNRPFQLASRQKQAGR*YLPVRTHKRSSID 339
           PP   +   S+G + P ++ S   Q+ R    V+   RSSID
Sbjct: 274 PPTKDESSGSSGPSDPCEIGSESMQSSRKSTDVKDKSRSSID 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,456,244
Number of Sequences: 37544
Number of extensions: 251133
Number of successful extensions: 587
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)