Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1104
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81120-5|CAB03347.1|  183|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AC087079-14|AAM81101.1|  392|Caenorhabditis elegans Nuclear pore...    27   7.0  
AC087079-13|AAK27866.1|  787|Caenorhabditis elegans Nuclear pore...    27   7.0  

>Z81120-5|CAB03347.1|  183|Caenorhabditis elegans Hypothetical
           protein T12D8.7 protein.
          Length = 183

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -3

Query: 402 TAETGRAVIPTRADSQEVIYRSVIDNNQTLMGDFSHQFGLRILK*QSSQLKQRKFIF 232
           TA     V+ T A  +E I +   D NQ  +    H +GL++   +  QL Q+ F++
Sbjct: 80  TAADMLGVLTTNAPDREKILQLANDKNQQPLPQIRHNYGLKLPNDRFCQL-QQNFVY 135


>AC087079-14|AAM81101.1|  392|Caenorhabditis elegans Nuclear pore
           complex protein protein13, isoform b protein.
          Length = 392

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 451 ANPPFQTEKTGHSNLLHGRNRQGGDTYPCGLTRG 350
           ANP FQT + G  N      R G +   CG+  G
Sbjct: 21  ANPIFQTNRVGQENSQQFTVRNGVEQELCGILGG 54


>AC087079-13|AAK27866.1|  787|Caenorhabditis elegans Nuclear pore
           complex protein protein13, isoform a protein.
          Length = 787

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 451 ANPPFQTEKTGHSNLLHGRNRQGGDTYPCGLTRG 350
           ANP FQT + G  N      R G +   CG+  G
Sbjct: 21  ANPIFQTNRVGQENSQQFTVRNGVEQELCGILGG 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,793,706
Number of Sequences: 27780
Number of extensions: 221890
Number of successful extensions: 520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)