Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1103
         (493 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113669-1|AAI13670.1|  777|Homo sapiens intraflagellar transpor...    29   8.8  
BC101494-1|AAI01495.1|  777|Homo sapiens intraflagellar transpor...    29   8.8  
AB037795-1|BAA92612.1|  764|Homo sapiens KIAA1374 protein protein.     29   8.8  

>BC113669-1|AAI13670.1|  777|Homo sapiens intraflagellar transport
           80 homolog (Chlamydomonas) protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 380 LIMILTDFFPLPFHW*PKSL---LQLRPDG*VITPFSLPFH 267
           ++ +  D +P+ FHW PKSL    Q + +  V+T     FH
Sbjct: 50  IVKLPDDIYPIDFHWFPKSLGVKKQTQAESFVLTSSDGKFH 90


>BC101494-1|AAI01495.1|  777|Homo sapiens intraflagellar transport
           80 homolog (Chlamydomonas) protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 380 LIMILTDFFPLPFHW*PKSL---LQLRPDG*VITPFSLPFH 267
           ++ +  D +P+ FHW PKSL    Q + +  V+T     FH
Sbjct: 50  IVKLPDDIYPIDFHWFPKSLGVKKQTQAESFVLTSSDGKFH 90


>AB037795-1|BAA92612.1|  764|Homo sapiens KIAA1374 protein protein.
          Length = 764

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 380 LIMILTDFFPLPFHW*PKSL---LQLRPDG*VITPFSLPFH 267
           ++ +  D +P+ FHW PKSL    Q + +  V+T     FH
Sbjct: 37  IVKLPDDIYPIDFHWFPKSLGVKKQTQAESFVLTSSDGKFH 77


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,623,170
Number of Sequences: 237096
Number of extensions: 994591
Number of successful extensions: 1157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)