Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1103
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   1.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   9.4  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
 Frame = -1

Query: 361 IFSPYLFTGSLRVYCSYVRT-------GRLLPPFPYL 272
           I S Y+F  +L  YC+ V T       G +L PF Y+
Sbjct: 348 IISRYVFRSALEDYCNIVATHLVCGILGSILVPFFYV 384


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 166 VTLELSYLIRKTVTPYTINHLVH*KKRNPLIPLF 65
           VTL +S L+  TV   TI   +   ++ PLI L+
Sbjct: 245 VTLGISALLSMTVFLMTIRESLPPTEKTPLISLY 278


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 405 YVNELSKTTDYDIN*FFPPTFSLVA*ESTAATSGRVGYYPLFP 277
           ++NE S+    ++   +  TFSLV  +       RV +  +FP
Sbjct: 209 FINENSELLFKELQAAYEETFSLVFTKIDNEIFNRVPFDKIFP 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,583
Number of Sequences: 438
Number of extensions: 2415
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)