Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1102
         (508 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q31DC5 Cluster: Chromosome segregation protein SMC; n=5...    36   0.70 
UniRef50_Q0UBT1 Cluster: Predicted protein; n=1; Phaeosphaeria n...    33   3.7  
UniRef50_Q8I398 Cluster: Putative uncharacterized protein PFI025...    33   4.9  

>UniRef50_Q31DC5 Cluster: Chromosome segregation protein SMC; n=5;
           Prochlorococcus marinus|Rep: Chromosome segregation
           protein SMC - Prochlorococcus marinus (strain MIT 9312)
          Length = 1196

 Score = 35.5 bits (78), Expect = 0.70
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +3

Query: 261 KPHCFKFKSLQLIINQDYEKNRKSA 335
           KPH  KF  LQ+I+ ++YEKN+KS+
Sbjct: 796 KPHHDKFDQLQIILKENYEKNQKSS 820


>UniRef50_Q0UBT1 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 492

 Score = 33.1 bits (72), Expect = 3.7
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = -1

Query: 187 QNLMCV*QYHSFPTSLAVI*VMELNHCDVTNERTDEVTLIHRYLL 53
           Q L C+  + +FP +  +I  +E  HC+V ++   +  +IH++L+
Sbjct: 94  QRLTCIGCHETFPCAFLLIEHLEFGHCNVISQAQFQGHVIHKHLI 138


>UniRef50_Q8I398 Cluster: Putative uncharacterized protein PFI0250c;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein PFI0250c - Plasmodium falciparum
            (isolate 3D7)
          Length = 2112

 Score = 32.7 bits (71), Expect = 4.9
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +2

Query: 77   HFVRSFVRYVTMIQFHDSDDRKACRETVVLLHTHQ---ILWCHDSQSK*KLIIPYGTAYY 247
            H  ++FV Y  ++ F    ++K  +  V+ L  H+   ++W ++  S     IP+ + YY
Sbjct: 886  HIFKNFVDY--LVNFKQKKNQKMIKGNVLDLDQHEFQILIWLYNVNSTKLNFIPFKSFYY 943

Query: 248  VMIKKTAL 271
            +++ +T L
Sbjct: 944  LLLSETNL 951


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,192,691
Number of Sequences: 1657284
Number of extensions: 8386101
Number of successful extensions: 14045
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14042
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)