Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1102
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    25   6.5  
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po...    25   8.6  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    25   8.6  

>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 131 DDRKACRETVVLLHTHQILWCHDSQSK*KLIIPYGTA 241
           +D   C  T  L+  HQ+++C ++     ++   GTA
Sbjct: 116 EDPSGCTATTALIVDHQVIYCANAGDSRTVLGRKGTA 152


>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 303 NQDYEKNRKSAQWHALRKV 359
           N+DY +NRK+  W  L ++
Sbjct: 130 NRDYLRNRKTGSWQYLSRL 148


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 52  TINTDESVSLRPFVRSLRHNDSI 120
           TI TD+   +RPF+    H +SI
Sbjct: 243 TIQTDKKHIIRPFIEDKSHVESI 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,552
Number of Sequences: 5004
Number of extensions: 36392
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)